RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA314497" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 5 ✖

bioproject 1

  • PRJNA314497 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9308609 9308609 PRJNA314497_S_NODE_1428_length_186_cov_2.700637_g1405_i0 PRJNA314497 1428 186 2.700637 5.02318482 Prevotella melaninogenica 28132 Bacteria Bacteria 331 1.82e-86   NTclustered gi|2028856500|gb|CP072350.1| 28132 g1405 i0 99.451 272.204301075269 182 1 98 0 5 186 697811 697630 Prevotella melaninogenica strain F0301 chromosome 2, complete sequence blastn 50630 331 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella melaninogenica
13134330 13134330 PRJNA314497_P_NODE_4771_length_164_cov_2.251852_g4619_i0 PRJNA314497 4771 164 2.251852 3.69303728 Prevotella melaninogenica 28132 Bacteria Bacteria 298 1.59e-76   NTclustered gi|2028852606|gb|CP072347.1| 28132 g4619 i0 99.39 297.134146341463 164 1 100 0 1 164 3338 3175 Prevotella melaninogenica strain F0516 chromosome 2, complete sequence blastn 48730 298 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella melaninogenica
13818623 13818623 PRJNA314497_S_NODE_1671_length_170_cov_3.390071_g1648_i0 PRJNA314497 1671 170 3.390071 5.7631207 Flavobacteriaceae 49546 Bacteria Bacteria 315 1.64e-81   NTclustered gi|1003115209|gb|CP010992.1| 996 g1648 i0 100 578 170 0 100 0 1 170 473455 473624 Flavobacterium columnare strain B185, complete genome blastn 98260 315 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium columnare
18232258 18232258 PRJNA314497_P_NODE_4595_length_172_cov_1.377622_g4443_i0 PRJNA314497 4595 172 1.377622 2.36950984 Porphyromonas sp. oral taxon 275 712435 Bacteria Bacteria 291 2.81e-74   NTclustered gi|2028834772|gb|CP072333.1| 712435 g4443 i0 97.093 116.075581395349 172 5 100 0 1 172 442502 442331 Porphyromonas sp. oral taxon 275 strain W7780 chromosome, complete genome blastn 19965 291 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas sp. oral taxon 275
20782122 20782122 PRJNA314497_S_NODE_237_length_490_cov_6.236443_g216_i0 PRJNA314497 237 490 6.236443 30.5585707 Prevotella melaninogenica 28132 Bacteria Bacteria 876 0   NTclustered gi|2028853645|gb|CP072348.1| 28132 g216 i0 98.978 33.1816326530612 489 5 99 0 2 490 1113861 1114349 Prevotella melaninogenica strain F0516 chromosome 1, complete sequence blastn 16259 876 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella melaninogenica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;