contig_metadata
9 rows where analysis = "blastn", bioproject = "PRJNA312899" and tax_phylum = "Verrucomicrobiota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 379551 | 379551 | PRJNA312899_P_NODE_4181_length_868_cov_27.377289_g3901_i0 | PRJNA312899 | 4181 | 868 | 27.377289 | 237.63486852 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 608 | 4.139999999999998e-169 | NTclustered | gi|2874253690|emb|OY969416.1| | 412056 | g3901 | i0 | 84.516 | 17.7615207373272 | 620 | 90 | 94 | 6 | 253 | 868 | 5267309 | 5267926 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 | blastn | 15417 | 608 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 2339682 | 2339682 | PRJNA312899_P_NODE_26642_length_361_cov_5.711538_g26200_i0 | PRJNA312899 | 26642 | 361 | 5.711538 | 20.61865218 | Opitutaceae | 134623 | Bacteria | Bacteria | 305 | 2.38e-78 | NTclustered | gi|1070531674|gb|CP016094.1| | 1838286 | g26200 | i0 | 84.566 | 4.79224376731302 | 311 | 44 | 86 | 3 | 46 | 354 | 1435291 | 1435599 | Lacunisphaera limnophila strain IG16b, complete genome | blastn | 1730 | 305 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Lacunisphaera | Lacunisphaera limnophila | |
| 4206490 | 4206490 | PRJNA312899_P_NODE_28644_length_346_cov_3.548822_g28202_i0 | PRJNA312899 | 28644 | 346 | 3.548822 | 12.27892412 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 449 | 9.94e-122 | NTclustered | gi|2874254096|emb|OY970179.1| | 412056 | g28202 | i0 | 90.173 | 155.28901734104 | 346 | 32 | 99 | 2 | 1 | 345 | 1729204 | 1728860 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 | blastn | 53730 | 449 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 8033242 | 8033242 | PRJNA312899_P_NODE_67527_length_199_cov_2.553333_g67085_i0 | PRJNA312899 | 67527 | 199 | 2.553333 | 5.08113267 | uncultured Verrucomicrobiota bacterium | 156588 | Bacteria | Bacteria | 189 | 1.26e-43 | NTclustered | gi|226525288|gb|FJ872373.1| | 156588 | g67085 | i0 | 84.158 | 290.949748743719 | 202 | 24 | 99 | 8 | 1 | 198 | 15390 | 15587 | Uncultured Verrucomicrobia bacterium clone 118 genomic sequence | blastn | 57899 | 189 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | uncultured Verrucomicrobiota bacterium | |||||
| 12543244 | 12543244 | PRJNA312899_P_NODE_54930_length_232_cov_1.114754_g54488_i0 | PRJNA312899 | 54930 | 232 | 1.114754 | 2.58622928 | Opitutaceae | 134623 | Bacteria | Bacteria | 60.2 | 1.24e-4 | NTclustered | gi|2724066732|gb|CP109796.1| | 1184151 | g54488 | i0 | 97.222 | 0.836206896551724 | 36 | 0 | 15 | 1 | 151 | 185 | 2497348 | 2497313 | Termitidicoccus mucosus strain TSB47 chromosome, complete genome | blastn | 194 | 60.2 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Termitidicoccus | Termitidicoccus mucosus | |
| 12543570 | 12543570 | PRJNA312899_P_NODE_83890_length_171_cov_1.672131_g83448_i0 | PRJNA312899 | 83890 | 171 | 1.672131 | 2.85934401 | Opitutia | 414999 | Bacteria | Bacteria | 145 | 2.3e-30 | NTclustered | gi|2518551946|emb|OX638348.1| | 333967 | g83448 | i0 | 87.5 | 226.298245614035 | 128 | 12 | 74 | 4 | 38 | 164 | 4608477 | 4608353 | MAG: uncultured Opitutaceae bacterium isolate b1b57f99-08c0-43d1-969e-fd0ef39b1292 genome assembly, chromosome: 1 | blastn | 38697 | 145 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | uncultured Opitutaceae bacterium | ||
| 13818272 | 13818272 | PRJNA312899_P_NODE_651_length_1639_cov_103.354717_g577_i0 | PRJNA312899 | 651 | 1639 | 103.354717 | 1693.98381163 | Verrucomicrobiota | 74201 | Bacteria | Bacteria | 1543 | 0 | NTclustered | gi|183579829|emb|AM905426.1| | 320771 | g577 | i0 | 84.596 | 211.114093959732 | 1571 | 222 | 95 | 18 | 55 | 1616 | 1 | 1560 | Bacterium Ellin514 23S rRNA gene, isolate Ellin514 | blastn | 346016 | 1555 | 0.992282958199357 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Pedosphaerae | Pedosphaerales | Pedosphaeraceae | Pedosphaera | Pedosphaera parvula | |
| 22055495 | 22055495 | PRJNA312899_P_NODE_11738_length_552_cov_21.630219_g11314_i0 | PRJNA312899 | 11738 | 552 | 21.630219 | 119.39880888 | Opitutus sp. VeGlc2 | 134634 | Bacteria | Bacteria | 811 | 0 | NTclustered | gi|164510706|emb|AJ966885.1| | 134634 | g11314 | i0 | 93.419 | 86.0905797101449 | 547 | 36 | 99 | 0 | 6 | 552 | 2530 | 1984 | Opitutus sp. VeGlc2 16S rRNA gene (partial), 23S rRNA gene, tRNA-Ala gene, tRNA-Ile gene, ITS1 and ITS2, strain DSM 11246 | blastn | 47522 | 811 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus sp. VeGlc2 | |
| 24016306 | 24016306 | PRJNA312899_P_NODE_31979_length_324_cov_14.392727_g31537_i0 | PRJNA312899 | 31979 | 324 | 14.392727 | 46.63243548 | Verrucomicrobiales | 48461 | Bacteria | Bacteria | 409 | 1.57e-109 | NTclustered | gi|2022020957|gb|CP059069.1| | 2562705 | g31537 | i0 | 89.474 | 272.950617283951 | 323 | 34 | 99 | 0 | 1 | 323 | 3411091 | 3411413 | Akkermansiaceae bacterium strain AJA081-3 chromosome, complete genome | blastn | 88436 | 411 | 0.995133819951338 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansiaceae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;