RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA312899" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA312899 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
380337 380337 PRJNA312899_P_NODE_8721_length_638_cov_76.110357_g8333_i0 PRJNA312899 8721 638 76.110357 485.58407766 Stenostomum sthenum 1611831 Platyhelminthes Platyhelminthes 1079 0   NTclustered gi|1215837197|ref|NC_035256.1| 1611831 g8333 i0 97.323 32.91065830721 635 17 99 0 1 635 8346 8980 Stenostomum sthenum mitochondrion, complete genome blastn 20997 1079 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum sthenum
17642474 17642474 PRJNA312899_P_NODE_63214_length_210_cov_1.552795_g62772_i0 PRJNA312899 63214 210 1.552795 3.2608695 Stenostomum 39238 Platyhelminthes Platyhelminthes 383 5.75e-102   NTclustered gi|209968707|gb|FJ384870.1| 52061 g62772 i0 99.524 25.652380952381 210 1 100 0 1 210 759 550 Stenostomum leucops isolate K05_55 28S ribosomal RNA gene, partial sequence blastn 5387 383 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops
20190863 20190863 PRJNA312899_P_NODE_59276_length_220_cov_1.192982_g58834_i0 PRJNA312899 59276 220 1.192982 2.6245604 root 1 Root_unresolved Root_unresolved 399 6.039999999999999e-107   NTclustered gi|60597293|gb|AY809307.1| 6182 g58834 i0 100 89.4272727272727 216 0 98 0 5 220 400 185 Schistosoma japonicum SJCHGC07711 protein mRNA, partial cds blastn 19674 399 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
22055792 22055792 PRJNA312899_P_NODE_27658_length_353_cov_15.414474_g27216_i0 PRJNA312899 27658 353 15.414474 54.41309322 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 52.8 0.033   NTclustered gi|687551389|emb|LK630385.1| 57078 g27216 i0 100 0.0793201133144476 28 0 8 0 68 95 323 296 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_scaffold0215510 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;