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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA312899" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 14 ✖

tax_clade 1

bioproject 1

  • PRJNA312899 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
379052 379052 PRJNA312899_P_NODE_16201_length_468_cov_57.861575_g15763_i0 PRJNA312899 16201 468 57.861575 270.792171 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 784 0   NTclustered gi|937408816|ref|NC_027966.1| 114742 g15763 i0 96.815 103.247863247863 471 11 99 2 1 467 10907 10437 Pythium insidiosum mitochondrial DNA, complete genome blastn 48320 784 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
2340227 2340227 PRJNA312899_P_NODE_73702_length_187_cov_5.123188_g73260_i0 PRJNA312899 73702 187 5.123188 9.58036156 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.016   NTclustered gi|325189095|emb|FR824246.1| 890382 g73260 i0 96.774 0.331550802139037 31 1 17 0 148 178 10273 10243 Albugo laibachii Nc14, genomic contig CONTIG_201_NC14_v4_47019_231 blastn 62 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
4892219 4892219 PRJNA312899_P_NODE_23164_length_390_cov_3.533724_g22722_i0 PRJNA312899 23164 390 3.533724 13.7815236 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 143 2.15e-29   NTclustered gi|2311026826|gb|OP554785.1| 4798 g22722 i0 93.75 24.5307692307692 96 5 25 1 286 381 458 364 Pythium hydnosporum isolate R-28 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9567 143 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium hydnosporum
4892811 4892811 PRJNA312899_P_NODE_77604_length_182_cov_2.300752_g77162_i0 PRJNA312899 77604 182 2.300752 4.18736864 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 220 4.01e-53   NTclustered gi|2314988938|ref|NC_067073.1| 89334 g77162 i0 96.269 97.6098901098901 134 5 98 0 46 179 33314 33181 Phytophthora clandestina voucher P3942 mitochondrion, complete genome blastn 17765 220 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora clandestina
4892844 4892844 PRJNA312899_P_NODE_80644_length_177_cov_2.375000_g80202_i0 PRJNA312899 80644 177 2.375 4.20375 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 322 1.03e-83   NTclustered gi|2440150|emb|X75631.1| 4788 g80202 i0 99.435 99.9717514124294 177 1 100 0 1 177 1417 1241 P.megasperma gene for 28S ribosomal RNA blastn 17695 322 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
9307529 9307529 PRJNA312899_P_NODE_40908_length_278_cov_18.131004_g40466_i0 PRJNA312899 40908 278 18.131004 50.40419112 Phytophthora novae-guineae 3070859 SAR_Eukaryotes SAR_Eukaryotes 442 1.2999999999999995e-119   NTclustered gi|1940379313|gb|MN883605.1| 3070859 g40466 i0 95.956 98.4568345323741 272 11 98 0 2 273 24171 23900 Phytophthora novae-guineae culture ICMP:19637 mitochondrion, complete genome blastn 27371 442 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora novae-guineae
9308313 9308313 PRJNA312899_P_NODE_85868_length_167_cov_0.864407_g85426_i0 PRJNA312899 85868 167 0.864407 1.44355969 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 100 4.93e-17   NTclustered gi|813137658|ref|XM_012343357.1| 695850 g85426 i0 82.203 0.706586826347305 118 19 70 2 51 167 1433 1549 Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA blastn 118 100 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
11857729 11857729 PRJNA312899_P_NODE_18190_length_442_cov_67.295165_g17749_i0 PRJNA312899 18190 442 67.295165 297.4446293 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 231 5.119999999999999e-56   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g17749 i0 80.317 56.7669683257919 315 54 70 4 132 439 441 128 Aphanomyces astaci polyubiquitin mRNA blastn 25091 231 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
13818387 13818387 PRJNA312899_P_NODE_75351_length_185_cov_2.625000_g74909_i0 PRJNA312899 75351 185 2.625 4.85625 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 292 8.55e-75   NTclustered gi|2026389858|gb|MT032128.1| 4796 g74909 i0 95.135 99.8972972972973 185 9 100 0 1 185 12053 12237 Phytophthora palmivora mitochondrion, complete genome blastn 18481 292 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora palmivora
16956518 16956518 PRJNA312899_P_NODE_18694_length_436_cov_33.478036_g18253_i0 PRJNA312899 18694 436 33.478036 145.96423696 Plasmopara halstedii 4781 SAR_Eukaryotes SAR_Eukaryotes 300 1.36e-76   NTclustered gi|1378165383|ref|XM_024716816.1| 4781 g18253 i0 83.18 0.75 327 55 75 0 2 328 1264 1590 Plasmopara halstedii t-complex protein zeta subunit (PHALS_02335), partial mRNA blastn 327 300 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
16956967 16956967 PRJNA312899_P_NODE_43494_length_268_cov_8.831050_g43052_i0 PRJNA312899 43494 268 8.83105 23.667214 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 97.1 1.12e-15   NTclustered gi|698793878|ref|XR_717100.1| 112090 g43052 i0 80.153 41.910447761194 131 25 49 1 54 183 3661 3791 Aphanomyces astaci 28S ribosomal RNA rRNA blastn 11232 97.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
20191078 20191078 PRJNA312899_P_NODE_78856_length_180_cov_3.809160_g78414_i0 PRJNA312899 78856 180 3.80916 6.856488 Peronosporales 4776 SAR_Eukaryotes SAR_Eukaryotes 333 4.87e-87   NTclustered gi|1238675774|gb|MF783088.1| 4784 g78414 i0 100 100 180 0 100 0 1 180 918 739 Phytophthora capsici isolate CACAO small subunit ribosomal RNA gene, partial sequence blastn 18000 333 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
22741678 22741678 PRJNA312899_P_NODE_64498_length_207_cov_1.113924_g64056_i0 PRJNA312899 64498 207 1.113924 2.30582268 root 1 Root_unresolved Root_unresolved 279 7.63e-71   NTclustered gi|166044510|emb|CU367419.1| 100861 g64056 i0 97.546 353.87922705314 163 4 79 0 45 207 366 204 Aphanomyces euteiches cDNA blastn 73253 279 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
24016307 24016307 PRJNA312899_P_NODE_31999_length_324_cov_11.170909_g31557_i0 PRJNA312899 31999 324 11.170909 36.19374516 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 172 2.2399999999999998e-38   NTclustered gi|301119740|ref|XM_002907552.1| 403677 g31557 i0 80 55.9783950617284 240 42 73 5 53 289 219 455 Phytophthora infestans T30-4 60S ribosomal protein L23a (PITG_02694), mRNA blastn 18137 172 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;