RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA312899" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA312899 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4892588 4892588 PRJNA312899_P_NODE_57884_length_223_cov_3.517241_g57442_i0 PRJNA312899 57884 223 3.517241 7.84344743 Naegleria 5761 Heterolobosea other_Eukaryota 346 8.11e-91   NTclustered gi|2618963742|gb|OR769034.1| 5762 g57442 i0 94.619 10.470852017937201 223 12 100 0 1 223 5513 5735 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 2335 346 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
9992662 9992662 PRJNA312899_P_NODE_33408_length_316_cov_2.666667_g32966_i0 PRJNA312899 33408 316 2.666667 8.42666772 Naegleria 5761 Heterolobosea other_Eukaryota 222 2.13e-53   NTclustered gi|2031946985|emb|OD958550.1| 5763 g32966 i0 82.331 39.0791139240506 266 37 84 5 1 266 3005 3260 Naegleria fowleri Karachi_NF001 strain blastn 12349 222 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
14408545 14408545 PRJNA312899_P_NODE_46052_length_259_cov_3.380952_g45610_i0 PRJNA312899 46052 259 3.380952 8.75666568 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 418 2.0199999999999998e-112   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g45610 i0 95.753 6.23552123552124 259 11 100 0 1 259 1958 2216 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1615 418 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;