RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA312899" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA312899 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4206966 4206966 PRJNA312899_P_NODE_54324_length_233_cov_4.157609_g53882_i0 PRJNA312899 54324 233 4.157609 9.68722897 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 91.6 4.42e-14   NTclustered gi|2108151088|gb|CP070722.1| 2026742 g53882 i0 91.176 3.13733905579399 68 5 29 1 81 147 2560297 2560364 MAG: Gemmatimonadetes bacterium isolate bin464 chromosome blastn 731 91.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
6757746 6757746 PRJNA312899_P_NODE_71666_length_190_cov_1.446809_g71224_i0 PRJNA312899 71666 190 1.446809 2.7489371 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 69.4 1.62e-7   NTclustered gi|575456455|gb|CP007128.1| 861299 g71224 i0 90.385 2.05789473684211 52 5 27 0 18 69 187575 187626 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 391 69.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
8716936 8716936 PRJNA312899_P_NODE_102807_length_161_cov_0.910714_g102365_i0 PRJNA312899 102807 161 0.910714 1.46624954 FCB group 1783270 Bacteria Bacteria 134 4.64e-27   NTclustered gi|575456455|gb|CP007128.1| 861299 g102365 i0 82.166 43.9503105590062 157 26 97 2 4 159 3972750 3972595 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 7076 135 0.992592592592593 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
9308121 9308121 PRJNA312899_P_NODE_74088_length_187_cov_1.478261_g73646_i0 PRJNA312899 74088 187 1.478261 2.76434807 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 52.8 0.016   NTclustered gi|2107901501|gb|CP070815.1| 2026742 g73646 i0 100 0.149732620320856 28 0 15 0 35 62 4310838 4310865 MAG: Gemmatimonadetes bacterium isolate bin118 chromosome blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
15681663 15681663 PRJNA312899_P_NODE_103073_length_161_cov_0.910714_g102631_i0 PRJNA312899 103073 161 0.910714 1.46624954 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 189 9.77e-44   NTclustered gi|2874253978|emb|OY970303.1| 412054 g102631 i0 88.889 1.91304347826087 153 17 95 0 8 160 3991294 3991446 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 308 189 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
23331532 23331532 PRJNA312899_P_NODE_38039_length_291_cov_6.553719_g37597_i0 PRJNA312899 38039 291 6.553719 19.07132229 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 292 1.46e-74   NTclustered gi|2874253755|emb|OY969695.1| 412054 g37597 i0 86.923 9.29209621993127 260 34 89 0 15 274 126914 126655 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 2704 292 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
23332512 23332512 PRJNA312899_P_NODE_96959_length_163_cov_0.894737_g96517_i0 PRJNA312899 96959 163 0.894737 1.45842131 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 219 1.2699999999999999e-52   NTclustered gi|226088597|dbj|AP009153.1| 379066 g96517 i0 91.25 1.65644171779141 160 14 98 0 4 163 1117439 1117280 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 270 219 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
24606204 24606204 PRJNA312899_P_NODE_76180_length_184_cov_2.125926_g75738_i0 PRJNA312899 76180 184 2.125926 3.91170384 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 185 1.4799999999999998e-42   NTclustered gi|575456455|gb|CP007128.1| 861299 g75738 i0 85.635 50.1684782608696 181 20 97 6 7 184 3612513 3612690 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 9231 185 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;