RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA312899" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA312899 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5483305 5483305 PRJNA312899_P_NODE_57925_length_223_cov_2.637931_g57483_i0 PRJNA312899 57925 223 2.637931 5.88258613 Orpinomyces sp. OUS1 301046 Fungi Fungi 137 5.31e-28   NTclustered gi|55859492|emb|AJ864475.1| 301046 g57483 i0 85.714 47.4035874439462 133 15 59 4 5 135 4590 4720 Orpinomyces sp. OUS1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA, clone V5-1 blastn 10571 137 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Orpinomyces Orpinomyces sp. OUS1
9307291 9307291 PRJNA312899_P_NODE_27868_length_352_cov_3.023102_g27426_i0 PRJNA312899 27868 352 3.023102 10.64131904 Fimicolochytrium jonesii 1396493 Fungi Fungi 115 4.1800000000000005e-21   NTclustered gi|2432112660|ref|XM_053066439.1| 1396493 g27426 i0 77 0.568181818181818 200 46 57 0 99 298 219 418 Fimicolochytrium jonesii ras-related GTP-binding protein A-like protein (EV422DRAFT_338844), mRNA blastn 200 115 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
18231574 18231574 PRJNA312899_P_NODE_60975_length_215_cov_7.987952_g60533_i0 PRJNA312899 60975 215 7.987952 17.1740968 Fimicolochytrium jonesii 1396493 Fungi Fungi 145 3.04e-30   NTclustered gi|2432095821|ref|XM_053071168.1| 1396493 g60533 i0 81.977 19.0558139534884 172 29 80 2 45 215 284 114 Fimicolochytrium jonesii ribosomal protein S27-domain-containing protein (EV422DRAFT_540954), mRNA blastn 4097 145 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;