RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA312899" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA312899 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4207424 4207424 PRJNA312899_P_NODE_81344_length_176_cov_1.606299_g80902_i0 PRJNA312899 81344 176 1.606299 2.82708624 Pseudobdellovibrio exovorus 453816 Bacteria Bacteria 303 3.71e-78   NTclustered gi|469929247|gb|CP003537.1| 1184267 g80902 i0 97.727 1 176 4 100 0 1 176 2115706 2115881 Bdellovibrio exovorus JSS, complete genome blastn 176 303 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
8033779 8033779 PRJNA312899_P_NODE_99887_length_162_cov_0.902655_g99445_i0 PRJNA312899 99887 162 0.902655 1.4623011 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 128 2.18e-25   NTclustered gi|578016248|gb|CP002190.1| 765869 g99445 i0 100 0.425925925925926 69 0 43 0 1 69 177799 177867 Bdellovibrio bacteriovorus W, complete genome blastn 69 128 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
12543007 12543007 PRJNA312899_P_NODE_33770_length_314_cov_2.520755_g33328_i0 PRJNA312899 33770 314 2.520755 7.9151707 Pseudobdellovibrio 2862745 Bacteria Bacteria 464 3.18e-126   NTclustered gi|507148233|ref|NR_103040.1| 453816 g33328 i0 93.312 218.21974522293 314 21 100 0 1 314 2398 2085 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 68521 464 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
20780678 20780678 PRJNA312899_P_NODE_20437_length_416_cov_12.901907_g19996_i0 PRJNA312899 20437 416 12.901907 53.67193312 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 124 8.36e-24   NTclustered gi|2800920897|gb|CP168968.1| 959 g19996 i0 80.892 0.377403846153846 157 30 38 0 240 396 3237000 3237156 Bdellovibrio bacteriovorus strain Bd5 chromosome, complete genome blastn 157 124 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
24606184 24606184 PRJNA312899_P_NODE_75360_length_185_cov_2.250000_g74918_i0 PRJNA312899 75360 185 2.25 4.1625 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 303 3.95e-78   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g74918 i0 96.216 121.410810810811 185 7 100 0 1 185 1292578 1292762 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 22461 303 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;