RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA312615" and tax_phylum = "Spirochaetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA312615 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1063976 1063976 PRJNA312615_P_NODE_37841_length_199_cov_2.720000_g37690_i0 PRJNA312615 37841 199 2.72 5.4128 Gracilinema 2951106 Bacteria Bacteria 255 1.23e-63   NTclustered gi|470488994|ref|NR_076899.1| 215591 g37690 i0 89.95 59.2311557788945 199 19 100 1 1 199 660 857 Treponema caldarium strain H1 23S ribosomal RNA, complete sequence blastn 11787 255 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Breznakiellaceae Gracilinema Gracilinema caldarium
1653357 1653357 PRJNA312615_P_NODE_50062_length_169_cov_0.866667_g49911_i0 PRJNA312615 50062 169 0.866667 1.46466723 Treponema vincentii 69710 Bacteria Bacteria 279 5.95e-71   NTclustered gi|1807378492|gb|CP048020.1| 69710 g49911 i0 96.45 10 169 6 100 0 1 169 447731 447563 Treponema vincentii strain OMZ 804 chromosome, complete genome blastn 1690 279 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
3614700 3614700 PRJNA312615_P_NODE_52363_length_166_cov_1.307692_g52212_i0 PRJNA312615 52363 166 1.307692 2.17076872 Gracilinema 2951106 Bacteria Bacteria 191 2.82e-44   NTclustered gi|470488994|ref|NR_076899.1| 215591 g52212 i0 92.029 104.560240963855 138 7 82 4 1 136 1650 1785 Treponema caldarium strain H1 23S ribosomal RNA, complete sequence blastn 17357 191 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Breznakiellaceae Gracilinema Gracilinema caldarium
14406857 14406857 PRJNA312615_P_NODE_19892_length_273_cov_1.700893_g19741_i0 PRJNA312615 19892 273 1.700893 4.64343789 Spirochaeta aurantia 147 Bacteria Bacteria 143 1.45e-29   NTclustered gi|47779237|gb|AY599019.1| 555314 g19741 i0 84.768 53.3553113553114 151 13 53 10 87 232 2104 2249 Spirochaeta aurantia strain M1 16S ribosomal RNA, tRNA-Ile, 23S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence blastn 14566 143 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Spirochaeta Spirochaeta aurantia

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;