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contig_metadata

21 rows where analysis = "blastn", bioproject = "PRJNA312615" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 21 ✖

tax_clade 1

bioproject 1

  • PRJNA312615 · 21 ✖

analysis 1

  • blastn · 21 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1653063 1653063 PRJNA312615_P_NODE_36222_length_204_cov_1.316129_g36071_i0 PRJNA312615 36222 204 1.316129 2.68490316 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 283 5.8e-72   NTclustered gi|698826681|ref|XM_009848067.1| 112090 g36071 i0 91.667 2.73039215686275 204 17 100 0 1 204 265 468 Aphanomyces astaci ribosomal protein S4 mRNA blastn 557 283 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
2339327 2339327 PRJNA312615_P_NODE_48982_length_171_cov_1.278689_g48831_i0 PRJNA312615 48982 171 1.278689 2.18655819 root 1 Root_unresolved Root_unresolved 316 4.6e-82   NTclustered gi|2845540150|gb|PQ478072.1| 4796 g48831 i0 100 99.5438596491228 171 0 100 0 1 171 375 545 Phytophthora palmivora clone BAX_control_positivo_de_HR_donado BAX protein (BAX) gene, complete cds blastn 17022 316 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora palmivora
2929242 2929242 PRJNA312615_P_NODE_51663_length_167_cov_0.864407_g51512_i0 PRJNA312615 51663 167 0.864407 1.44355969 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 99 1.77e-16   NTclustered gi|813135523|ref|XM_012343129.1| 695850 g51512 i0 91.549 2.83832335329341 71 6 43 0 25 95 2186 2116 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 474 99 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
4205083 4205083 PRJNA312615_P_NODE_1764_length_812_cov_5.431193_g1648_i0 PRJNA312615 1764 812 5.431193 44.10128716 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 291 1.59e-73   NTclustered gi|2795027182|ref|XM_067926253.1| 4785 g1648 i0 76.382 30.4088669950739 597 107 71 27 203 779 583 1 Phytophthora cinnamomi 40S ribosomal protein S8 (IUM83_02343), partial mRNA blastn 24692 291 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
6755496 6755496 PRJNA312615_P_NODE_16366_length_303_cov_2.807087_g16215_i0 PRJNA312615 16366 303 2.807087 8.50547361 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 169 2.69e-37   NTclustered gi|669153141|ref|XM_008613911.1| 1156394 g16215 i0 86.452 28.6336633663366 155 19 51 2 1 154 367 214 Saprolegnia diclina VS20 60S ribosomal protein mRNA blastn 8676 169 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
6755949 6755949 PRJNA312615_P_NODE_36206_length_204_cov_1.316129_g36055_i0 PRJNA312615 36206 204 1.316129 2.68490316 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 268 1.6199999999999998e-67   NTclustered gi|166038692|emb|CU352740.1| 100861 g36055 i0 90.594 4.36274509803922 202 19 99 0 3 204 907 706 Aphanomyces euteiches cDNA blastn 890 268 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
6756210 6756210 PRJNA312615_P_NODE_4906_length_542_cov_2.062880_g4760_i0 PRJNA312615 4906 542 2.06288 11.1808096 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 152 5.11e-32   NTclustered gi|669145241|ref|XM_008609961.1| 1156394 g4760 i0 75.692 28.3892988929889 325 67 59 10 2 320 134 452 Saprolegnia diclina VS20 50S ribosomal protein L22e mRNA blastn 15387 152 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
8031517 8031517 PRJNA312615_P_NODE_36787_length_202_cov_2.307190_g36636_i0 PRJNA312615 36787 202 2.30719 4.6605238 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 300 5.69e-77   NTclustered gi|673038061|ref|XM_008874770.1| 157072 g36636 i0 93.939 3.8019801980198 198 12 98 0 1 198 79 276 Aphanomyces invadans 60S ribosomal protein L38 mRNA blastn 768 300 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
8031565 8031565 PRJNA312615_P_NODE_39227_length_196_cov_1.040816_g39076_i0 PRJNA312615 39227 196 1.040816 2.03999936 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 145 2.7199999999999997e-30   NTclustered gi|675188148|ref|XM_008904711.1| 761204 g39076 i0 80.645 1.74489795918367 186 36 95 0 1 186 2080 2265 Phytophthora parasitica INRA-310 hypothetical protein mRNA blastn 342 145 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
8031605 8031605 PRJNA312615_P_NODE_4127_length_583_cov_6.361423_g3985_i0 PRJNA312615 4127 583 6.361423 37.08709609 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 296 2.4100000000000003e-75   NTclustered gi|698822976|ref|XM_009846215.1| 112090 g3985 i0 78.288 58.7907375643225 479 90 81 11 22 494 57 527 Aphanomyces astaci 40S ribosomal protein S13 mRNA blastn 34275 296 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
8031978 8031978 PRJNA312615_P_NODE_6287_length_486_cov_1.425629_g6139_i0 PRJNA312615 6287 486 1.425629 6.92855694 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 346 1.94e-90   NTclustered gi|2795040529|ref|XM_067944818.1| 4785 g6139 i0 81.971 73.2201646090535 416 67 85 6 30 441 426 15 Phytophthora cinnamomi 60S ribosomal protein L23 (IUM83_19754), partial mRNA blastn 35585 346 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
11856610 11856610 PRJNA312615_P_NODE_21110_length_265_cov_1.865741_g20959_i0 PRJNA312615 21110 265 1.865741 4.94421365 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 215 2.92e-51   NTclustered gi|695404622|ref|XM_009525283.1| 67593 g20959 i0 81.961 80.7433962264151 255 44 96 2 3 256 1241 988 Phytophthora sojae hypothetical protein partial mRNA blastn 21397 215 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
13131503 13131503 PRJNA312615_P_NODE_12511_length_349_cov_4.303333_g12361_i0 PRJNA312615 12511 349 4.303333 15.01863217 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 276 1.7999999999999998e-69   NTclustered gi|166052859|emb|CU367305.1| 100861 g12361 i0 80.98 42.2206303724928 347 66 99 0 1 347 540 886 Aphanomyces euteiches cDNA blastn 14735 276 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
13132045 13132045 PRJNA312615_P_NODE_38251_length_198_cov_2.382550_g38100_i0 PRJNA312615 38251 198 2.38255 4.717449 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 200 5.79e-47   NTclustered gi|669159105|ref|XM_008616893.1| 1156394 g38100 i0 84.848 3.47979797979798 198 30 100 0 1 198 250 447 Saprolegnia diclina VS20 50S ribosomal protein L13 mRNA blastn 689 200 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
14406719 14406719 PRJNA312615_P_NODE_14672_length_320_cov_4.656827_g14521_i0 PRJNA312615 14672 320 4.656827 14.9018464 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 263 1.27e-65   NTclustered gi|813119301|ref|XM_012340833.1| 695850 g14521 i0 82.508 88.05625 303 50 94 3 3 303 633 934 Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA blastn 28178 263 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
14407188 14407188 PRJNA312615_P_NODE_34892_length_207_cov_8.196203_g34741_i0 PRJNA312615 34892 207 8.196203 16.96614021 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 156 1.34e-33   NTclustered gi|669165645|ref|XM_008620163.1| 1156394 g34741 i0 82.857 3.48792270531401 175 28 84 2 4 177 278 105 Saprolegnia diclina VS20 caltractin mRNA blastn 722 156 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
15680747 15680747 PRJNA312615_P_NODE_2153_length_755_cov_2.924929_g2031_i0 PRJNA312615 2153 755 2.924929 22.08321395 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 616 2.1399999999999995e-171   NTclustered gi|669151349|ref|XM_008613015.1| 1156394 g2031 i0 83.161 92.0649006622517 677 110 89 4 81 755 1543 869 Saprolegnia diclina VS20 adenosylhomocysteinase mRNA blastn 69509 616 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
15680951 15680951 PRJNA312615_P_NODE_31373_length_218_cov_1.786982_g31222_i0 PRJNA312615 31373 218 1.786982 3.89562076 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 171 5.099999999999999e-38   NTclustered gi|695462293|ref|XM_009540118.1| 67593 g31222 i0 80.734 2.87155963302752 218 42 100 0 1 218 609 392 Phytophthora sojae hypothetical protein partial mRNA blastn 626 171 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
16955830 16955830 PRJNA312615_P_NODE_43694_length_185_cov_1.125000_g43543_i0 PRJNA312615 43694 185 1.125 2.08125 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 270 4.01e-68   NTclustered gi|166035484|emb|CU354363.1| 100861 g43543 i0 92.973 99.9675675675676 185 13 100 0 1 185 643 459 Aphanomyces euteiches cDNA blastn 18494 270 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
24604719 24604719 PRJNA312615_P_NODE_5700_length_508_cov_1.664488_g5552_i0 PRJNA312615 5700 508 1.664488 8.45559904 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 351 4.38e-92   NTclustered gi|2795045367|ref|XM_067939679.1| 4785 g5552 i0 79.417 83.1653543307087 515 92 100 14 1 508 527 1034 Phytophthora cinnamomi transitional endoplasmic reticulum ATPase (IUM83_14904), partial mRNA blastn 42248 351 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
24604842 24604842 PRJNA312615_P_NODE_8220_length_429_cov_6.731579_g8070_i0 PRJNA312615 8220 429 6.731579 28.87847391 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 399 1.2799999999999998e-106   NTclustered gi|2794923360|ref|XM_067881981.1| 164328 g8070 i0 83.933 94.3310023310023 417 67 97 0 8 424 450 34 Phytophthora ramorum Calmodulin (KRP23_11430), partial mRNA blastn 40468 399 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;