RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA312615" and tax_phylum = "Mucoromycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA312615 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2929333 2929333 PRJNA312615_P_NODE_5603_length_511_cov_2.582251_g5455_i0 PRJNA312615 5603 511 2.582251 13.19530261 Rhizomucor pusillus 4840 Fungi Fungi 200 1.69e-46   NTclustered gi|2837731086|ref|XM_069388369.1| 4840 g5455 i0 80.62 33.8140900195695 258 50 50 0 231 488 267 10 Rhizomucor pusillus 60S ribosomal protein eL43 (VTP01DRAFT_9167), partial mRNA blastn 17279 200 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Lichtheimiaceae Rhizomucor Rhizomucor pusillus
5481702 5481702 PRJNA312615_P_NODE_33625_length_211_cov_1.574074_g33474_i0 PRJNA312615 33625 211 1.574074 3.32129614 Lichtheimia ornata 688661 Fungi Fungi 200 6.25e-47   NTclustered gi|2553594699|ref|XM_058489316.1| 688661 g33474 i0 89.744 60.0284360189573 156 16 74 0 1 156 171 16 Lichtheimia ornata heat shock protein HSS1 (O0I10_009322), partial mRNA blastn 12666 200 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Lichtheimiaceae Lichtheimia Lichtheimia ornata
11856635 11856635 PRJNA312615_P_NODE_22130_length_259_cov_1.923810_g21979_i0 PRJNA312615 22130 259 1.92381 4.9826679 Rhizopus microsporus 58291 Fungi Fungi 204 6.149999999999998e-48   NTclustered gi|1331189772|ref|XM_023607192.1| 1340429 g21979 i0 82.895 26.0579150579151 228 37 88 2 29 255 420 194 Rhizopus microsporus ATCC 52813 uncharacterized protein (RHIMIDRAFT_211203), mRNA blastn 6749 204 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus microsporus
18229668 18229668 PRJNA312615_P_NODE_21555_length_262_cov_3.178404_g21404_i0 PRJNA312615 21555 262 3.178404 8.32741848 Lichtheimia ornata 688661 Fungi Fungi 182 2.92e-41   NTclustered gi|2553574211|ref|XM_058485539.1| 688661 g21404 i0 83.085 21.530534351145 201 32 76 2 63 262 265 464 Lichtheimia ornata malate dehydrogenase, NAD-dependent (O0I10_005499), partial mRNA blastn 5641 182 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Lichtheimiaceae Lichtheimia Lichtheimia ornata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;