RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA312615" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA312615 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15680878 15680878 PRJNA312615_P_NODE_27333_length_234_cov_1.102703_g27182_i0 PRJNA312615 27333 234 1.102703 2.58032502 Polychytrium aggregatum 110093 Fungi Fungi 292 1.13e-74   NTclustered gi|2432140668|ref|XM_053110323.1| 110093 g27182 i0 89.27 86.1666666666667 233 25 99 0 1 233 944 1176 Polychytrium aggregatum uncharacterized protein (BJ171DRAFT_497986), mRNA blastn 20163 292 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
15681009 15681009 PRJNA312615_P_NODE_3393_length_630_cov_2.734940_g3255_i0 PRJNA312615 3393 630 2.73494 17.230122 Polychytrium aggregatum 110093 Fungi Fungi 54.7 0.017   NTclustered gi|2432144566|ref|XM_053115345.1| 110093 g3255 i0 100 0.046031746031746 29 0 5 0 380 408 553 581 Polychytrium aggregatum ran-specific GTPase-activating protein (BJ171DRAFT_616054), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
19504118 19504118 PRJNA312615_P_NODE_29636_length_225_cov_0.857955_g29485_i0 PRJNA312615 29636 225 0.857955 1.93039875 Rhizophlyctis rosea 64517 Fungi Fungi 385 1.74e-102   NTclustered gi|1866582754|gb|MT730929.1| 64517 g29485 i0 97.758 99.5911111111111 223 5 99 0 1 223 3916 4138 Rhizophlyctis rosea isolate KP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22408 385 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;