contig_metadata
5 rows where analysis = "blastn", bioproject = "PRJNA312615" and tax_phylum = "Bdellovibrionota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 378284 | 378284 | PRJNA312615_P_NODE_36961_length_202_cov_1.333333_g36810_i0 | PRJNA312615 | 36961 | 202 | 1.333333 | 2.69333266 | Bacteriovorax stolpii | 960 | Bacteria | Bacteria | 189 | 1.28e-43 | NTclustered | gi|1700689994|gb|CP030035.1| | 960 | g36810 | i0 | 83.838 | 7.1980198019802 | 198 | 32 | 98 | 0 | 5 | 202 | 3573992 | 3574189 | Bacteriovorax stolpii strain AC01 chromosome, complete genome | blastn | 1454 | 189 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovorax | Bacteriovorax stolpii | ||
| 4891945 | 4891945 | PRJNA312615_P_NODE_5084_length_534_cov_6.476289_g4937_i0 | PRJNA312615 | 5084 | 534 | 6.476289 | 34.58338326 | Bacteriovorax | 146784 | Bacteria | Bacteria | 752 | 0 | NTclustered | gi|1700689994|gb|CP030035.1| | 960 | g4937 | i0 | 92.135 | 540.574906367041 | 534 | 40 | 99 | 2 | 2 | 534 | 1662139 | 1661607 | Bacteriovorax stolpii strain AC01 chromosome, complete genome | blastn | 288667 | 752 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovorax | Bacteriovorax stolpii | ||
| 10582223 | 10582223 | PRJNA312615_P_NODE_35869_length_205_cov_1.288462_g35718_i0 | PRJNA312615 | 35869 | 205 | 1.288462 | 2.6413471 | Bacteriovorax sp. HI3 | 2984118 | Bacteria | Bacteria | 148 | 2.22e-31 | NTclustered | gi|2321225508|dbj|AP026946.1| | 2984118 | g35718 | i0 | 79.902 | 2.41951219512195 | 204 | 39 | 99 | 2 | 3 | 205 | 3704428 | 3704630 | Bacteriovorax sp. HI3 DNA, complete genome | blastn | 496 | 148 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovorax | Bacteriovorax sp. HI3 | ||
| 23330290 | 23330290 | PRJNA312615_P_NODE_34559_length_208_cov_3.194969_g34408_i0 | PRJNA312615 | 34559 | 208 | 3.194969 | 6.64553552 | Bacteriovorax stolpii | 960 | Bacteria | Bacteria | 224 | 3.65e-54 | NTclustered | gi|1700689994|gb|CP030035.1| | 960 | g34408 | i0 | 86.256 | 10.0240384615385 | 211 | 23 | 99 | 5 | 2 | 208 | 164709 | 164917 | Bacteriovorax stolpii strain AC01 chromosome, complete genome | blastn | 2085 | 224 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovorax | Bacteriovorax stolpii | ||
| 24604326 | 24604326 | PRJNA312615_P_NODE_36980_length_202_cov_1.267974_g36829_i0 | PRJNA312615 | 36980 | 202 | 1.267974 | 2.56130748 | Bacteriovorax sp. HI3 | 2984118 | Bacteria | Bacteria | 169 | 1.67e-37 | NTclustered | gi|2321225508|dbj|AP026946.1| | 2984118 | g36829 | i0 | 82 | 4.25742574257426 | 200 | 34 | 99 | 2 | 4 | 202 | 3699101 | 3698903 | Bacteriovorax sp. HI3 DNA, complete genome | blastn | 860 | 169 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovorax | Bacteriovorax sp. HI3 |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;