RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA312615" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA312615 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5481818 5481818 PRJNA312615_P_NODE_40145_length_193_cov_2.833333_g39994_i0 PRJNA312615 40145 193 2.833333 5.46833269 Minutocellus polymorphus 265543 SAR_Eukaryotes SAR_Eukaryotes 95.3 2.73e-15   NTclustered gi|2020303798|gb|MW417227.1| 265543 g39994 i0 82.883 1.40414507772021 111 13 56 5 5 112 8590 8483 Minutocellus polymorphus isolate CNS00217 mitochondrion, complete genome blastn 271 95.3 1 Eukaryota Sar   Bacillariophyta Mediophyceae Cymatosirales Cymatosiraceae Minutocellus Minutocellus polymorphus
13131517 13131517 PRJNA312615_P_NODE_1291_length_901_cov_4.109155_g1184_i0 PRJNA312615 1291 901 4.109155 37.02348655 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 438 5.979999999999999e-118   NTclustered gi|657012367|gb|KF302531.1| 2850 g1184 i0 88.462 56.7269700332963 364 40 40 2 290 652 385 23 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 51111 438 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;