RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA312615" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA312615 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
377928 377928 PRJNA312615_P_NODE_20441_length_269_cov_2.190909_g20290_i0 PRJNA312615 20441 269 2.190909 5.89354521 Cryptosporidium parvum 5807 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.007   NTclustered gi|66358725|ref|XM_626541.1| 353152 g20290 i0 100 0.107806691449814 29 0 11 0 213 241 6970 6998 Cryptosporidium parvum Iowa II 4x PHD domain containing protein (cgd2_3540) partial mRNA blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum
4891667 4891667 PRJNA312615_P_NODE_25604_length_242_cov_0.974093_g25453_i0 PRJNA312615 25604 242 0.974093 2.35730506 Toxoplasma 5810 SAR_Eukaryotes SAR_Eukaryotes 119 2.12e-22   NTclustered gi|820702250|tpe|LN714502.1| 432359 g25453 i0 85.965 33.6487603305785 114 12 46 4 17 128 678433 678322 TPA_asm: Toxoplasma gondii VEG, chromosome chrXII, complete genome blastn 8143 119 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
8716775 8716775 PRJNA312615_P_NODE_51487_length_167_cov_0.864407_g51336_i0 PRJNA312615 51487 167 0.864407 1.44355969 Eucoccidiorida 75739 SAR_Eukaryotes SAR_Eukaryotes 196 6.12e-46   NTclustered gi|8927036|gb|AF076872.1|AF076872 482539 g51336 i0 92.086 83.4071856287425 139 11 83 0 2 140 570 432 Isospora felis large subunit ribosomal RNA gene, partial sequence blastn 13929 196 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Cystoisospora Cystoisospora felis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;