RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA312615" and tax_kingdom = "Bamfordvirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bamfordvirae · 4 ✖

bioproject 1

  • PRJNA312615 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20190020 20190020 PRJNA312615_P_NODE_35236_length_206_cov_51.191083_g35085_i0 PRJNA312615 35236 206 51.191083 105.45363098 root 1 Root_unresolved Root_unresolved 267 5.91e-67   NTclustered gi|2452970428|gb|OQ518271.1| 10515 g35085 i0 100 69.9029126213592 144 0 70 0 7 150 11379 11236 Human adenovirus 2 isolate HAdV-C2/USA/8A5/2011, complete genome blastn 14400 267 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
24015780 24015780 PRJNA312615_P_NODE_36379_length_203_cov_23.019481_g36228_i0 PRJNA312615 36379 203 23.019481 46.72954643 root 1 Root_unresolved Root_unresolved 274 3.47e-69   NTclustered gi|2452970428|gb|OQ518271.1| 10515 g36228 i0 100 92.2955665024631 148 0 93 0 1 148 28637 28490 Human adenovirus 2 isolate HAdV-C2/USA/8A5/2011, complete genome blastn 18736 274 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
25289857 25289857 PRJNA312615_P_NODE_16240_length_304_cov_20.929412_g16089_i0 PRJNA312615 16240 304 20.929412 63.62541248 root 1 Root_unresolved Root_unresolved 516 8.36e-142   NTclustered gi|2620236085|gb|OR777220.1| 10515 g16089 i0 98.962 95.0822368421053 289 1 95 2 6 293 14830 15117 Human adenovirus 2 isolate HAdV-C2/USA/13R1/2017, complete genome blastn 28905 516 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
25290095 25290095 PRJNA312615_P_NODE_35980_length_204_cov_42.277419_g35829_i0 PRJNA312615 35980 204 42.277419 86.24593476 root 1 Root_unresolved Root_unresolved 263 7.549999999999999e-66   NTclustered gi|2452970428|gb|OQ518271.1| 10515 g35829 i0 98.658 73.0392156862745 149 1 73 1 1 148 11551 11403 Human adenovirus 2 isolate HAdV-C2/USA/8A5/2011, complete genome blastn 14900 263 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;