RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA312615" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA312615 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10582617 10582617 PRJNA312615_P_NODE_55209_length_164_cov_0.886957_g55058_i0 PRJNA312615 55209 164 0.886957 1.45460948 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 174 2.8e-39   NTclustered gi|226525339|gb|FJ872375.1| 156588 g55058 i0 95.413 156.30487804878 109 5 66 0 54 162 28538 28646 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 25634 174 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
11267260 11267260 PRJNA312615_P_NODE_48129_length_173_cov_1.645161_g47978_i0 PRJNA312615 48129 173 1.645161 2.84612853 Singulisphaera 466152 Bacteria Bacteria 235 1.34e-57   NTclustered gi|485099129|ref|NR_102524.1| 466153 g47978 i0 91.329 143.450867052023 173 14 100 1 1 173 101 272 Singulisphaera acidiphila strain MOB10 23S ribosomal RNA gene, complete sequence blastn 24817 235 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Singulisphaera Singulisphaera acidiphila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;