RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA312615" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA312615 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4205595 4205595 PRJNA312615_P_NODE_41904_length_189_cov_1.450000_g41753_i0 PRJNA312615 41904 189 1.45 2.7405 Heterostelium album 2086695 Evosea other_Eukaryota 56.5 0.001   NTclustered gi|1160571566|ref|XM_020575277.1| 670386 g41753 i0 92.308 0.206349206349206 39 3 21 0 146 184 1534 1572 Polysphondylium pallidum PN500 polyketide synthase partial mRNA blastn 39 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
10582075 10582075 PRJNA312615_P_NODE_28809_length_228_cov_1.301676_g28658_i0 PRJNA312615 28809 228 1.301676 2.96782128 Entamoeba histolytica 5759 Evosea other_Eukaryota 75 4.34e-9   NTclustered gi|183236658|ref|XM_001914464.1| 294381 g28658 i0 82.292 1.30263157894737 96 8 42 6 66 161 942 856 Entamoeba histolytica HM-1:IMSS uncharacterized protein (EHI_033450), partial mRNA blastn 297 75 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
14407343 14407343 PRJNA312615_P_NODE_43312_length_186_cov_1.102190_g43161_i0 PRJNA312615 43312 186 1.10219 2.0500734 Vexilliferidae sp. 107MAR 338730 Discosea other_Eukaryota 141 3.299999999999999e-29   NTclustered gi|73623529|gb|DQ087330.1| 338730 g43161 i0 81.183 36.5698924731183 186 25 100 6 1 186 190 15 Vexilliferidae sp. 107MAR 18S ribosomal RNA gene, partial sequence blastn 6802 141 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae   Vexilliferidae sp. 107MAR
22055266 22055266 PRJNA312615_P_NODE_5898_length_500_cov_4.037694_g5750_i0 PRJNA312615 5898 500 4.037694 20.18847 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 283 1.59e-71   NTclustered gi|470442906|ref|XM_004339540.1| 1257118 g5750 i0 84.859 24.266 284 39 56 4 109 390 21 302 Acanthamoeba castellanii str. Neff 60S ribosomal protein, putative (ACA1_063390), partial mRNA blastn 12133 283 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;