RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA312107" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA312107 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4204842 4204842 PRJNA312107_P_NODE_24884_length_163_cov_0.912281_g24718_i0 PRJNA312107 24884 163 0.912281 1.48701803 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 139 1.01e-28   NTclustered gi|2874253959|emb|OY970284.1| 2651171 g24718 i0 82.692 1.91411042944785 156 27 96 0 1 156 1318265 1318110 MAG: Thermoanaerobaculia bacterium isolate MFD05513.bin.1.42 genome assembly, chromosome: 1 blastn 312 139 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
11856243 11856243 PRJNA312107_P_NODE_21350_length_166_cov_1.504274_g21184_i0 PRJNA312107 21350 166 1.5042739999999999 2.49709484 Acidobacteriota bacterium 1978231 Bacteria Bacteria 302 1.2500000000000001e-77   NTclustered gi|1958098837|gb|CP065005.1| 1978231 g21184 i0 99.398 101.71686746988 166 1 100 0 1 166 4651372 4651537 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome blastn 16885 302 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
12542115 12542115 PRJNA312107_P_NODE_10590_length_222_cov_1.456647_g10424_i0 PRJNA312107 10590 222 1.456647 3.23375634 Bacteria 2 Bacteria Bacteria 224 3.94e-54   NTclustered gi|2621702213|emb|OY760195.1| 188475 g10424 i0 85.135 169.004504504504 222 29 99 4 1 220 871090 870871 MAG: uncultured Holophaga sp. isolate 19663c38-e6f5-42a8-8268-146037a524bf genome assembly, chromosome: 1 blastn 37519 224 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Holophaga uncultured Holophaga sp.
13131296 13131296 PRJNA312107_P_NODE_11151_length_217_cov_1.232143_g10985_i0 PRJNA312107 11151 217 1.232143 2.67375031 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 361 2.8e-95   NTclustered gi|2874254108|emb|OY970193.1| 171953 g10985 i0 96.774 286.889400921659 217 6 99 1 1 216 1687240 1687456 MAG: uncultured Acidobacteriota bacterium isolate MFD09206.bin.1.42 genome assembly, chromosome: 1 blastn 62255 361 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
15680392 15680392 PRJNA312107_P_NODE_23653_length_164_cov_0.904348_g23487_i0 PRJNA312107 23653 164 0.904348 1.48313072 Bryobacterales bacterium F-183 2802972 Bacteria Bacteria 215 1.65e-51   NTclustered gi|2131941663|dbj|AP025252.1| 2802972 g23487 i0 91.304 143.201219512195 161 8 96 4 4 161 634458 634615 Bryobacterales bacterium F-183 DNA, nearly complete genome blastn 23485 215 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium F-183
18229314 18229314 PRJNA312107_P_NODE_23735_length_164_cov_0.904348_g23569_i0 PRJNA312107 23735 164 0.904348 1.48313072 uncultured Holophaga sp. 188475 Bacteria Bacteria 259 7.52e-65   NTclustered gi|2621704223|emb|OY761614.1| 188475 g23569 i0 95.152 114.689024390244 165 7 100 1 1 164 644214 644378 MAG: uncultured Holophaga sp. isolate c3c763bb-72ba-4188-aae9-c4b83244ba6d genome assembly, chromosome: 1 blastn 18809 259 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Holophaga uncultured Holophaga sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;