RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA312107" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA312107 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7441582 7441582 PRJNA312107_P_NODE_7286_length_264_cov_1.344186_g7120_i0 PRJNA312107 7286 264 1.344186 3.54865104 Deinococcus 1298 Bacteria Bacteria 466 7.27e-127   NTclustered gi|730601855|gb|CP010028.1| 57497 g7120 i0 98.485 187.659090909091 264 4 100 0 1 264 69828 69565 Deinococcus swuensis strain DY59, complete genome blastn 49542 466 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiopugnans
11856284 11856284 PRJNA312107_P_NODE_25470_length_162_cov_0.920354_g25304_i0 PRJNA312107 25470 162 0.920354 1.49097348 Deinococcus sp. D7000 2755035 Bacteria Bacteria 272 9.51e-69   NTclustered gi|1868564935|gb|CP058537.1| 2755035 g25304 i0 96.914 1 162 5 100 0 1 162 56785 56946 Deinococcus sp. D7000 plasmid p_3, complete sequence blastn 162 272 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. D7000
24015485 24015485 PRJNA312107_P_NODE_26499_length_158_cov_2.908257_g26333_i0 PRJNA312107 26499 158 2.908257 4.59504606 Deinococcus 1298 Bacteria Bacteria 259 7.17e-65   NTclustered gi|1220362168|gb|CP021081.1| 317577 g26333 i0 96.203 207.120253164557 158 6 100 0 1 158 2341068 2340911 Deinococcus ficus strain CC-FR2-10, complete genome blastn 32725 259 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus
25289749 25289749 PRJNA312107_P_NODE_20640_length_167_cov_0.881356_g20474_i0 PRJNA312107 20640 167 0.881356 1.47186452 Thermus 270 Bacteria Bacteria 303 3.5e-78   NTclustered gi|320149275|gb|CP001962.1| 743525 g20474 i0 99.401 5.98802395209581 167 1 100 0 1 167 1252225 1252059 Thermus scotoductus SA-01, complete genome blastn 1000 303 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;