RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA312107" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA312107 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8030908 8030908 PRJNA312107_P_NODE_5987_length_290_cov_1.348548_g5821_i0 PRJNA312107 5987 290 1.348548 3.9107892 Alpharetrovirus avileu 3426267 Viruses Viruses 520 6.119999999999998e-143   NTclustered gi|1495410574|gb|MF817823.1| 11864 g5821 i0 98.966 99.9931034482759 290 3 100 0 1 290 3286 3575 Avian leukosis virus strain RAV60 gag protein (gag) gene, complete cds; and polymerase (pol) gene, partial cds blastn 28998 520 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu
15091356 15091356 PRJNA312107_P_NODE_5212_length_310_cov_1.325670_g5046_i0 PRJNA312107 5212 310 1.32567 4.109577 root 1 Root_unresolved Root_unresolved 573 4.999999999999998e-159   NTclustered gi|1495410574|gb|MF817823.1| 11864 g5046 i0 100 100 310 0 100 0 1 310 2863 2554 Avian leukosis virus strain RAV60 gag protein (gag) gene, complete cds; and polymerase (pol) gene, partial cds blastn 31000 573 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu
25289740 25289740 PRJNA312107_P_NODE_15880_length_183_cov_2.746269_g15714_i0 PRJNA312107 15880 183 2.746269 5.02567227 Alpharetrovirus 153057 Viruses Viruses 339 1.07e-88   NTclustered gi|1495410574|gb|MF817823.1| 11864 g15714 i0 100 98.2513661202186 183 0 100 0 1 183 1124 1306 Avian leukosis virus strain RAV60 gag protein (gag) gene, complete cds; and polymerase (pol) gene, partial cds blastn 17980 339 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu
25289769 25289769 PRJNA312107_P_NODE_6040_length_288_cov_6.163180_g5874_i0 PRJNA312107 6040 288 6.16318 17.7499584 Alpharetrovirus 153057 Viruses Viruses 331 3.06e-86   NTclustered gi|699361943|gb|KM376510.1| 11864 g5874 i0 98.919 100.458333333333 185 2 65 0 104 288 342 158 Avian leukosis virus isolate HLJ13SH01, complete genome blastn 28932 331 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;