RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA309466" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA309466 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9991372 9991372 PRJNA309466_P_NODE_6268_length_234_cov_15.627027_g6211_i0 PRJNA309466 6268 234 15.627027 36.56724318 Eurotatoria 2816136 Rotifera other_Eukaryota 433 6.41e-117   NTclustered gi|72153731|gb|DQ089739.1| 104782 g6211 i0 100 51.8205128205128 234 0 100 0 1 234 1849 1616 Adineta vaga 28S ribosomal RNA gene, partial sequence blastn 12126 433 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
11855483 11855483 PRJNA309466_P_NODE_3030_length_358_cov_222.579288_g2974_i0 PRJNA309466 3030 358 222.579288 796.83385104 Adineta vaga 104782 Rotifera other_Eukaryota 614 3.449999999999999e-171   NTclustered gi|72153731|gb|DQ089739.1| 104782 g2974 i0 99.12 61.5642458100559 341 3 95 0 11 351 2446 2786 Adineta vaga 28S ribosomal RNA gene, partial sequence blastn 22040 614 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
13130567 13130567 PRJNA309466_P_NODE_12991_length_181_cov_1.446970_g12934_i0 PRJNA309466 12991 181 1.44697 2.6190157 Adineta vaga 104782 Rotifera other_Eukaryota 300 4.970000000000001e-77   NTclustered gi|259129963|gb|GQ398061.1| 104782 g12934 i0 98.246 60.4696132596685 171 3 94 0 2 172 4333 4163 Adineta vaga 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 10945 300 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
15090639 15090639 PRJNA309466_P_NODE_12692_length_182_cov_9.263158_g12635_i0 PRJNA309466 12692 182 9.263158 16.85894756 Metazoa 33208 Rotifera other_Eukaryota 337 3.82e-88   NTclustered gi|37785582|gb|AY210469.1| 96448 g12635 i0 100 70.8516483516484 182 0 100 0 1 182 1816 1635 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 12895 337 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
16365621 16365621 PRJNA309466_P_NODE_4133_length_284_cov_6.540426_g4077_i0 PRJNA309466 4133 284 6.540426 18.57480984 Eurotatoria 2816136 Rotifera other_Eukaryota 494 3.62e-135   NTclustered gi|72153762|gb|DQ089743.1| 231624 g4077 i0 99.267 54.8521126760563 273 2 96 0 12 284 1911 2183 Rotaria rotatoria 28S ribosomal RNA gene, partial sequence blastn 15578 494 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria rotatoria
16365713 16365713 PRJNA309466_P_NODE_8813_length_208_cov_113.962264_g8756_i0 PRJNA309466 8813 208 113.962264 237.04150912 Metazoa 33208 Rotifera other_Eukaryota 363 7.409999999999998e-96   NTclustered gi|1399047|gb|U41281.1|PAU41281 44582 g8756 i0 98.544 99.0144230769231 206 2 99 1 1 205 219 424 Philodina acuticornis 18S rRNA gene blastn 20595 363 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina acuticornis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;