RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA309466" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA309466 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6754493 6754493 PRJNA309466_P_NODE_18986_length_157_cov_2.703704_g18929_i0 PRJNA309466 18986 157 2.703704 4.24481528 Bryobacterales bacterium 2026791 Bacteria Bacteria 174 2.65e-39   NTclustered gi|2874253826|emb|OY969810.1| 2026791 g18929 i0 89.706 34 136 14 87 0 17 152 6658815 6658950 MAG: Bryobacterales bacterium isolate MFD04967.bin.c.1 genome assembly, chromosome: 1 blastn 5338 174 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;