RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA309466" and tax_kingdom = "Shotokuvirae"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Shotokuvirae · 2 ✖

bioproject 1

  • PRJNA309466 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2927478 2927478 PRJNA309466_P_NODE_15363_length_169_cov_3.391667_g15306_i0 PRJNA309466 15363 169 3.391667 5.73191723 Psittacidae aveparvovirus 2794556 Viruses Viruses 254 3.6e-63   NTclustered gi|2015372674|gb|MW046380.1| 2794556 g15306 i0 94.545 0.976331360946746 165 8 98 1 1 165 817 654 MAG: Psittacidae aveparvovirus isolate fmg67par043 genomic sequence, sequence blastn 165 254 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Aveparvovirus Psittacidae aveparvovirus
16954213 16954213 PRJNA309466_P_NODE_5334_length_251_cov_7.683168_g5277_i0 PRJNA309466 5334 251 7.683168 19.28475168 Fish-associated parvo-like hybrid virus 3003968 Viruses Viruses 348 2.5900000000000005e-91   NTclustered gi|2028284253|gb|MW046451.1| 3003968 g5277 i0 91.732 3.05179282868526 254 16 99 3 1 250 431 683 MAG: Grus japonensis parvo-like hybrid virus isolate cra70par025 genomic sequence, sequence blastn 766 348 1 Viruses   Shotokuvirae Cressdnaviricota Arfiviricetes Lineavirales Oomyviridae Nicoomyvirus Fish-associated parvo-like hybrid virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;