contig_metadata
5 rows where analysis = "blastn", bioproject = "PRJNA309466" and tax_kingdom = "Fusobacteriati"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6165729 | 6165729 | PRJNA309466_P_NODE_12285_length_185_cov_1.058824_g12228_i0 | PRJNA309466 | 12285 | 185 | 1.058824 | 1.9588244 | root | 1 | Root_unresolved | Root_unresolved | 327 | 2.34e-85 | NTclustered | gi|255694003|gb|FJ471660.2| | 851 | g12228 | i0 | 99.444 | 131.356756756757 | 180 | 1 | 97 | 0 | 6 | 185 | 565 | 744 | Fusobacterium nucleatum strain ChDC F318 16S ribosomal RNA gene, partial sequence | blastn | 24301 | 327 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium nucleatum | ||
| 19502804 | 19502804 | PRJNA309466_P_NODE_16676_length_166_cov_0.888889_g16619_i0 | PRJNA309466 | 16676 | 166 | 0.888889 | 1.47555574 | Leptotrichia sp. SK-5 | 3075818 | Bacteria | Bacteria | 279 | 5.86e-71 | NTclustered | gi|2899356158|dbj|AP028931.1| | 3075818 | g16619 | i0 | 96.988 | 10.8915662650602 | 166 | 5 | 100 | 0 | 1 | 166 | 586946 | 586781 | Leptotrichia sp. SK-5 DNA, complete genome | blastn | 1808 | 279 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia sp. SK-5 | ||
| 21464906 | 21464906 | PRJNA309466_P_NODE_5937_length_240_cov_3.308901_g5880_i0 | PRJNA309466 | 5937 | 240 | 3.308901 | 7.9413624 | Fusobacterium | 848 | Bacteria | Bacteria | 411 | 3.089999999999999e-110 | NTclustered | gi|285798258|gb|GU408240.1| | 851 | g5880 | i0 | 100 | 122.1375 | 222 | 0 | 93 | 0 | 9 | 230 | 280 | 59 | Fusobacterium nucleatum clone OEA050 16S ribosomal RNA gene, partial sequence | blastn | 29313 | 411 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium nucleatum | ||
| 22053385 | 22053385 | PRJNA309466_P_NODE_5078_length_256_cov_1.801932_g5021_i0 | PRJNA309466 | 5078 | 256 | 1.801932 | 4.61294592 | Fusobacterium pseudoperiodonticum | 2663009 | Bacteria | Bacteria | 470 | 5.42e-128 | NTclustered | gi|1276705688|gb|CP024698.1| | 2663009 | g5021 | i0 | 100 | 472.07421875 | 254 | 0 | 99 | 0 | 3 | 256 | 736846 | 736593 | Fusobacterium pseudoperiodonticum strain KCOM 1283 chromosome, complete genome | blastn | 120851 | 470 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium pseudoperiodonticum | ||
| 24014818 | 24014818 | PRJNA309466_P_NODE_1259_length_655_cov_3.508251_g1217_i0 | PRJNA309466 | 1259 | 655 | 3.508251 | 22.97904405 | Fusobacterium | 848 | Bacteria | Bacteria | 1142 | 0 | NTclustered | gi|1370537877|gb|CP028108.1| | 860 | g1217 | i0 | 99.058 | 464.302290076336 | 637 | 5 | 98 | 1 | 4 | 640 | 462734 | 463369 | Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome | blastn | 304118 | 1147 | 0.995640802092415 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium periodonticum |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;