RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA309466" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA309466 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10580835 10580835 PRJNA309466_P_NODE_7369_length_222_cov_0.947977_g7312_i0 PRJNA309466 7369 222 0.947977 2.10450894 uncultured Chroococcidiopsis sp. 259957 Bacteria Bacteria 363 8.01e-96   NTclustered gi|453199515|gb|JQ997495.1| 259957 g7312 i0 96.774 205.599099099099 217 7 98 0 1 217 389 173 Uncultured Chroococcidiopsis sp. clone GKJWQY101AIMXN 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 45643 363 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis uncultured Chroococcidiopsis sp.
11855445 11855445 PRJNA309466_P_NODE_16510_length_166_cov_1.410256_g16453_i0 PRJNA309466 16510 166 1.410256 2.34102496 uncultured cyanobacterium 1211 Bacteria Bacteria 56.5 0.001   NTclustered gi|2874254044|emb|OY970368.1| 1211 g16453 i0 100 0.602409638554217 30 0 24 0 110 139 3875000 3875029 MAG: uncultured cyanobacterium isolate MFD04716.bin.1.71 genome assembly, chromosome: 1 blastn 100 56.5 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium
21464658 21464658 PRJNA309466_P_NODE_11637_length_188_cov_4.352518_g11580_i0 PRJNA309466 11637 188 4.352518 8.18273384 root 1 Root_unresolved Root_unresolved 335 1.4299999999999995e-87   NTclustered gi|1026604611|gb|KU173576.1| 1211 g11580 i0 100 101.090425531915 181 0 96 0 8 188 359 179 Uncultured cyanobacterium clone SH3102B92 16S ribosomal RNA gene, partial sequence blastn 19005 335 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;