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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA309466" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 14 ✖

bioproject 1

  • PRJNA309466 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1651666 1651666 PRJNA309466_P_NODE_7822_length_217_cov_7.440476_g7765_i0 PRJNA309466 7822 217 7.440476 16.14583292 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 363 7.8e-96   NTclustered gi|292559443|ref|NC_013986.1| 5778 g7765 i0 98.077 94.2718894009217 208 4 96 0 6 213 20177 20384 Hartmannella vermiformis mitochondrion, complete genome blastn 20457 363 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
3613771 3613771 PRJNA309466_P_NODE_7223_length_223_cov_3.948276_g7166_i0 PRJNA309466 7223 223 3.948276 8.80465548 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 339 1.36e-88   NTclustered gi|2675812010|gb|PP339676.1| 5778 g7166 i0 100 102.242152466368 183 0 99 0 40 222 324 142 Vermamoeba vermiformis isolate TFEW12 small subunit ribosomal RNA gene, partial sequence blastn 22800 339 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5480336 5480336 PRJNA309466_P_NODE_6945_length_226_cov_3.457627_g6888_i0 PRJNA309466 6945 226 3.457627 7.81423702 Echinosteliopsis oligospora 1908696 Evosea other_Eukaryota 383 6.28e-102   NTclustered gi|1465309723|gb|MH809394.1| 1908696 g6888 i0 98.174 96.4513274336283 219 4 97 0 2 220 1167 1385 Echinosteliopsis oligospora isolate HH14-A2-1A small subunit ribosomal RNA gene, partial sequence blastn 21798 383 1 Eukaryota Amoebozoa   Evosea Eumycetozoa   Echinosteliopsidaceae Echinosteliopsis Echinosteliopsis oligospora
6165824 6165824 PRJNA309466_P_NODE_17125_length_164_cov_2.582609_g17068_i0 PRJNA309466 17125 164 2.582609 4.23547876 Physaraceae 1115744 Evosea other_Eukaryota 135 1.32e-27   NTclustered gi|117165490|dbj|AB259503.1| 385460 g17068 i0 83.333 91.8231707317073 150 22 91 3 16 164 388 241 Physarum crateriforme gene for small subunit ribosomal RNA, partial sequence, specimen_voucher: TNS-M-Y-17855 (TNS) blastn 15059 135 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum crateriforme
6754422 6754422 PRJNA309466_P_NODE_12686_length_182_cov_11.541353_g12629_i0 PRJNA309466 12686 182 11.541353 21.00526246 Tubulinea group 04 sp. CAL5 1215995 Tubulinea other_Eukaryota 313 6.43e-81   NTclustered gi|399764275|gb|JQ271786.1| 1215995 g12629 i0 98.315 77.3736263736264 178 3 98 0 1 178 1504 1681 Tubulinea group 04 sp. CAL5 18S ribosomal RNA gene, partial sequence blastn 14082 313 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. CAL5
13130592 13130592 PRJNA309466_P_NODE_15011_length_171_cov_1.622951_g14954_i0 PRJNA309466 15011 171 1.622951 2.77524621 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 305 9.96e-79   NTclustered gi|507138087|gb|KC583131.1| 590481 g14954 i0 98.83 101.210526315789 171 2 100 0 1 171 553 723 Uncultured Amoebozoa clone RS.01f.10m.23 18S ribosomal RNA gene, partial sequence blastn 17307 305 1 Eukaryota Amoebozoa             uncultured Amoebozoa
13130651 13130651 PRJNA309466_P_NODE_3691_length_306_cov_10.431907_g3635_i0 PRJNA309466 3691 306 10.431907 31.92163542 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 296 1.19e-75   NTclustered gi|511487963|gb|JX898537.1| 1260765 g3635 i0 84.466 18.9411764705882 309 39 100 9 1 306 56 358 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 5796 296 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
15090863 15090863 PRJNA309466_P_NODE_5992_length_239_cov_4.947368_g5935_i0 PRJNA309466 5992 239 4.947368 11.82420952 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 436 5.0799999999999985e-118   NTclustered gi|399764275|gb|JQ271786.1| 1215995 g5935 i0 100 71.397489539749 236 0 99 0 2 237 1139 904 Tubulinea group 04 sp. CAL5 18S ribosomal RNA gene, partial sequence blastn 17064 436 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. CAL5
15679632 15679632 PRJNA309466_P_NODE_6113_length_237_cov_1.930851_g6056_i0 PRJNA309466 6113 237 1.930851 4.57611687 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 353 5.209999999999998e-93   NTclustered gi|300078496|gb|GU001158.1| 5778 g6056 i0 99.485 55.704641350211 194 1 97 0 4 197 2348 2541 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13202 353 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15679648 15679648 PRJNA309466_P_NODE_7733_length_218_cov_4.408284_g7676_i0 PRJNA309466 7733 218 4.408284 9.61005912 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 224 3.859999999999999e-54   NTclustered gi|292559443|ref|NC_013986.1| 5778 g7676 i0 85.52 1.01376146788991 221 25 100 7 1 218 26006 25790 Hartmannella vermiformis mitochondrion, complete genome blastn 221 224 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20778283 20778283 PRJNA309466_P_NODE_10877_length_193_cov_25.798611_g10820_i0 PRJNA309466 10877 193 25.798611 49.79131923 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 335 1.48e-87   NTclustered gi|300078496|gb|GU001158.1| 5778 g10820 i0 98.421 98.9481865284974 190 3 98 0 3 192 3849 3660 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19097 335 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22053262 22053262 PRJNA309466_P_NODE_10298_length_197_cov_3.020270_g10241_i0 PRJNA309466 10298 197 3.02027 5.9499319 Tubulinea group 04 sp. CAL5 1215995 Tubulinea other_Eukaryota 363 6.939999999999998e-96   NTclustered gi|399764275|gb|JQ271786.1| 1215995 g10241 i0 100 14.0710659898477 196 0 99 0 2 197 218 413 Tubulinea group 04 sp. CAL5 18S ribosomal RNA gene, partial sequence blastn 2772 363 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. CAL5
24014788 24014788 PRJNA309466_P_NODE_11179_length_191_cov_4.845070_g11122_i0 PRJNA309466 11179 191 4.84507 9.2540837 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 339 1.13e-88   NTclustered gi|441475833|emb|FN562425.4| 688089 g11122 i0 100 50.848167539267 183 0 96 0 2 184 422 604 Amoebozoa sp. SZA36 18S rRNA gene, isolate SZA36 blastn 9712 339 1 Eukaryota Amoebozoa             Amoebozoa sp. SZA36
25289127 25289127 PRJNA309466_P_NODE_14340_length_174_cov_1.744000_g14283_i0 PRJNA309466 14340 174 1.744 3.03456 Vermamoeba 1260114 Tubulinea other_Eukaryota 311 2.19e-80   NTclustered gi|89243398|gb|DQ407529.1| 5778 g14283 i0 99.415 98.3218390804598 171 1 98 0 4 174 440 270 Hartmannella vermiformis isolate WWS1.5 18S ribosomal RNA gene gene, partial sequence blastn 17108 311 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;