RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA306153" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA306153 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2927027 2927027 PRJNA306153_S_NODE_1763_length_186_cov_3.382166_g1750_i0 PRJNA306153 1763 186 3.382166 6.29082876 Musca domestica 7370 Arthropoda Arthropoda 128 2.57e-25   NTclustered gi|2568143911|ref|XM_059118101.1| 7370 g1750 i0 82.432 31.6236559139785 148 24 79 2 36 182 953 807 PREDICTED: Musca domestica large ribosomal subunit protein uL3 (LOC131800619), mRNA blastn 5882 128 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Diptera Muscidae Musca Musca domestica
5479848 5479848 PRJNA306153_S_NODE_705_length_284_cov_5.454902_g692_i0 PRJNA306153 705 284 5.454902 15.49192168 Palaemon carinicauda 392227 Arthropoda Arthropoda 99 3.32e-16   NTclustered gi|2805002225|ref|XM_068364412.1| 392227 g692 i0 82.727 0.387323943661972 110 19 39 0 8 117 752 861 PREDICTED: Palaemon carinicauda ribosomal protein L5 (RpL5), mRNA blastn 110 99 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Decapoda Palaemonidae Palaemon Palaemon carinicauda
13815599 13815599 PRJNA306153_S_NODE_171_length_491_cov_17.822511_g159_i0 PRJNA306153 171 491 17.822511 87.50852901 Truljalia 1767464 Arthropoda Arthropoda 117 1.68e-21   NTclustered gi|962093334|gb|KR902992.1| 1767465 g159 i0 90 18.3299389002037 90 9 18 0 1 90 506 417 Truljalia sp. Chi 28S ribosomal RNA gene, partial sequence blastn 9000 117 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Orthoptera Gryllidae Truljalia Truljalia sp. Chi
20777887 20777887 PRJNA306153_S_NODE_2377_length_161_cov_4.166667_g2364_i0 PRJNA306153 2377 161 4.166667 6.70833387 Lepeophtheirus salmonis 72036 Arthropoda Arthropoda 76.8 7.94e-10   NTclustered gi|290561924|gb|BT121430.1| 72036 g2364 i0 86.765 0.84472049689441 68 9 42 0 93 160 410 343 Lepeophtheirus salmonis Atlantic form clone lsaA-evv-506-132 40S ribosomal protein S20 putative mRNA, complete cds blastn 136 76.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Hexanauplia Siphonostomatoida Caligidae Lepeophtheirus Lepeophtheirus salmonis
22052888 22052888 PRJNA306153_S_NODE_2438_length_159_cov_4.107692_g2425_i0 PRJNA306153 2438 159 4.107692 6.53123028 Nasonia vitripennis 7425 Arthropoda Arthropoda 119 1.2800000000000001e-22   NTclustered gi|2022781837|ref|NM_001394204.1| 7425 g2425 i0 88 4.48427672955975 100 12 63 0 48 147 232 331 Nasonia vitripennis ribosomal protein L30 (RpL30), mRNA blastn 713 119 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hymenoptera Pteromalidae Nasonia Nasonia vitripennis
22739055 22739055 PRJNA306153_S_NODE_538_length_315_cov_6.702797_g525_i0 PRJNA306153 538 315 6.702797 21.11381055 Timema 61471 Arthropoda Arthropoda 52.8 0.029   NTclustered gi|1936895876|emb|OA565436.1| 61478 g525 i0 100 0.177777777777778 28 0 9 0 288 315 58733 58706 1_Tdi_b3v08 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Phasmatodea Timematidae Timema Timema douglasi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;