RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA299585" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA299585 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8028585 8028585 PRJNA299585_S_NODE_8267_length_247_cov_7.596330_g8037_i0 PRJNA299585 8267 247 7.59633 18.7629351 Fringilla coelebs 37598 Chordata Chordata 52.8 0.022   NTclustered gi|2917610922|emb|OZ228690.1| 37598 g8037 i0 100 0.11336032388664 28 0 11 0 155 182 63098186 63098159 Fringilla coelebs genome assembly, chromosome: Z blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Fringilla Fringilla coelebs
9303379 9303379 PRJNA299585_S_NODE_9268_length_225_cov_4.438776_g9038_i0 PRJNA299585 9268 225 4.438776 9.987246 Apteryx mantelli 2696672 Chordata Chordata 54.7 0.006   NTclustered gi|840016890|emb|LK066393.1| 202946 g9038 i0 100 0.128888888888889 29 0 13 0 179 207 207549 207577 Apteryx australis mantelli genome assembly AptMant0, scaffold scaffold1803 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx mantelli
19501016 19501016 PRJNA299585_S_NODE_10056_length_210_cov_6.027624_g9826_i0 PRJNA299585 10056 210 6.027624 12.6580104 Spinus spinus 160760 Chordata Chordata 54.7 0.005   NTclustered gi|2917663466|emb|OZ228753.1| 160760 g9826 i0 94.444 0.342857142857143 36 1 17 1 83 117 37205157 37205122 Spinus spinus genome assembly, chromosome: 5 blastn 72 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Spinus Spinus spinus
21463487 21463487 PRJNA299585_S_NODE_5297_length_350_cov_52.828660_g5067_i0 PRJNA299585 5297 350 52.82866 184.90031 Cheloniidae 8465 Chordata Chordata 52.8 0.033   NTclustered gi|2911500576|emb|OZ223607.1| 8472 g5067 i0 100 0.24 28 0 8 0 320 347 10181252 10181279 Lepidochelys kempii isolate rLepKem1 genome assembly, chromosome: 21 blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Lepidochelys Lepidochelys kempii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;