RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA299585" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA299585 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7439709 7439709 PRJNA299585_S_NODE_9126_length_228_cov_2.587940_g8896_i0 PRJNA299585 9126 228 2.58794 5.9005032 Streptococcus 1301 Bacteria Bacteria 344 2.99e-90   NTclustered gi|288522|emb|X68427.1| 1303 g8896 i0 93.86 331.456140350877 228 14 100 0 1 228 1125 898 S.oralis gene for 23S rRNA blastn 75572 346 0.994219653179191 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis
13815135 13815135 PRJNA299585_S_NODE_5491_length_341_cov_11.471154_g5261_i0 PRJNA299585 5491 341 11.471154 39.11663514 Bacillales 1385 Bacteria Bacteria 625 1.5099999999999995e-174   NTclustered gi|2556673542|gb|OR367734.1| 1282 g5261 i0 99.707 109.964809384164 341 1 100 0 1 341 177 517 Staphylococcus epidermidis strain A3 16S ribosomal RNA gene, partial sequence blastn 37498 630 0.992063492063492 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis
13815139 13815139 PRJNA299585_S_NODE_6031_length_318_cov_10.176471_g5801_i0 PRJNA299585 6031 318 10.176471 32.36117778 Bacillales 1385 Bacteria Bacteria 542 1.45e-149   NTclustered gi|2692800537|gb|CP146065.1| 1283 g5801 i0 97.484 467.066037735849 318 7 100 1 1 318 771545 771861 Staphylococcus haemolyticus strain SPS12 chromosome, complete genome blastn 148527 547 0.990859232175503 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus haemolyticus
17639395 17639395 PRJNA299585_S_NODE_9914_length_213_cov_2.288043_g9684_i0 PRJNA299585 9914 213 2.288043 4.87353159 Streptococcus 1301 Bacteria Bacteria 394 2.7e-105   NTclustered gi|1578069334|emb|LR216032.1| 1313 g9684 i0 100 319 213 0 100 0 1 213 23943 23731 Streptococcus pneumoniae strain 2245STDY5775874 genome assembly, chromosome: 1 blastn 67947 394 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae
18913182 18913182 PRJNA299585_S_NODE_9195_length_226_cov_9.030457_g8965_i0 PRJNA299585 9195 226 9.030457 20.40883282 Staphylococcus 1279 Bacteria Bacteria 418 1.7199999999999998e-112   NTclustered gi|1321358399|gb|MG757693.1| 1280 g8965 i0 100 192.08407079646 226 0 100 0 1 226 442 667 Staphylococcus aureus strain ZS-48H 16S ribosomal RNA gene, partial sequence blastn 43411 418 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus
21463465 21463465 PRJNA299585_S_NODE_13017_length_173_cov_3.555556_g12787_i0 PRJNA299585 13017 173 3.555556 6.15111188 Staphylococcus 1279 Bacteria Bacteria 316 4.67e-82   NTclustered gi|1714026535|gb|CP031277.1| 1290 g12787 i0 100 443.832369942197 171 0 99 0 3 173 919435 919265 Staphylococcus hominis strain 19A chromosome, complete genome blastn 76783 316 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus hominis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;