RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA299585" and tax_kingdom = "Fungi"

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tax_superkingdom 1

tax_kingdom 1

  • Fungi · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA299585 · 12 ✖

analysis 1

  • blastn · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1650080 1650080 PRJNA299585_S_NODE_9602_length_219_cov_2.484211_g9372_i0 PRJNA299585 9602 219 2.484211 5.44042209 Olpidium brassicae 70189 Fungi Fungi 324 3.72e-84   NTclustered gi|311235549|ref|NG_027564.1| 70189 g9372 i0 93.607 99.6575342465753 219 11 100 2 1 219 1943 1728 Olpidium brassicae DUKE DUH0009361 28S rRNA gene, partial sequence; from reference material blastn 21825 324 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
6752744 6752744 PRJNA299585_S_NODE_13446_length_169_cov_4.000000_g13216_i0 PRJNA299585 13446 169 4 6.76 uncultured fungus 175245 Fungi Fungi 313 5.859999999999999e-81   NTclustered gi|2159201108|emb|OU940125.1| 175245 g13216 i0 100 100.289940828402 169 0 100 0 1 169 1496 1664 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus01419 blastn 16949 313 1 Eukaryota Opisthokonta Fungi           uncultured fungus
9989860 9989860 PRJNA299585_S_NODE_10168_length_208_cov_20.301676_g9938_i0 PRJNA299585 10168 208 20.301676 42.22748608 root 1 Root_unresolved Root_unresolved 63.9 8.42e-6   NTclustered gi|2749703766|ref|XM_014090103.2| 63577 g9938 i0 85.714 1.24038461538462 63 6 30 1 146 208 2198 2257 Trichoderma atroviride uncharacterized protein (TrAtP1_012533), partial mRNA blastn 258 63.9 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Hypocreaceae Trichoderma Trichoderma atroviride
9989871 9989871 PRJNA299585_S_NODE_13348_length_170_cov_3.283688_g13118_i0 PRJNA299585 13348 170 3.283688 5.5822696 Dothideomycetes 147541 Fungi Fungi 311 2.12e-80   NTclustered gi|206597967|gb|FJ176833.1| 40221 g13118 i0 100 98.8352941176471 168 0 99 0 3 170 215 48 Symbiotaphrina kochii isolate AFTOL-ID 1902 18S small subunit ribosomal RNA gene, partial sequence blastn 16802 311 1 Eukaryota Opisthokonta Fungi Ascomycota   Symbiotaphrinales Symbiotaphrinaceae Symbiotaphrina Symbiotaphrina kochii
13128938 13128938 PRJNA299585_S_NODE_14431_length_161_cov_3.060606_g14201_i0 PRJNA299585 14431 161 3.060606 4.92757566 Olpidium brassicae 70189 Fungi Fungi 215 1.61e-51   NTclustered gi|311235549|ref|NG_027564.1| 70189 g14201 i0 94.928 103.018633540373 138 6 85 1 1 137 3100 3237 Olpidium brassicae DUKE DUH0009361 28S rRNA gene, partial sequence; from reference material blastn 16586 215 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
14404134 14404134 PRJNA299585_S_NODE_3632_length_462_cov_3.725173_g3195_i1 PRJNA299585 3632 462 3.725173 17.21029926 uncultured Ascomycota 175243 Fungi Fungi 678 0   NTclustered gi|313483124|gb|HQ433129.1| 175243 g3195 i1 99.73 78.6168831168831 370 1 80 0 1 370 335 704 Uncultured Ascomycota clone asc07192 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 36321 678 1 Eukaryota Opisthokonta Fungi Ascomycota         uncultured Ascomycota
18226975 18226975 PRJNA299585_S_NODE_8315_length_246_cov_3.801843_g8085_i0 PRJNA299585 8315 246 3.801843 9.35253378 uncultured fungus 175245 Fungi Fungi 455 1.4500000000000002e-123   NTclustered gi|2159201108|emb|OU940125.1| 175245 g8085 i0 100 99.0325203252033 246 0 100 0 1 246 752 997 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus01419 blastn 24362 455 1 Eukaryota Opisthokonta Fungi           uncultured fungus
18226985 18226985 PRJNA299585_S_NODE_8895_length_233_cov_2.784314_g8665_i0 PRJNA299585 8895 233 2.784314 6.48745162 uncultured fungus 175245 Fungi Fungi 425 1.07e-114   NTclustered gi|2159201108|emb|OU940125.1| 175245 g8665 i0 99.571 2.73390557939914 233 1 100 0 1 233 1159 1391 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus01419 blastn 637 425 1 Eukaryota Opisthokonta Fungi           uncultured fungus
18913146 18913146 PRJNA299585_S_NODE_15855_length_151_cov_2.254098_g15625_i0 PRJNA299585 15855 151 2.254098 3.40368798 root 1 Root_unresolved Root_unresolved 279 5.19e-71   NTclustered gi|1280049812|gb|MF072571.1| 29917 g15625 i0 100 100 151 0 100 0 1 151 705 555 Cladosporium cladosporioides strain 007 small subunit ribosomal RNA gene, partial sequence blastn 15100 279 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Cladosporiales Cladosporiaceae Cladosporium Cladosporium cladosporioides
21463466 21463466 PRJNA299585_S_NODE_13077_length_172_cov_7.825175_g12847_i0 PRJNA299585 13077 172 7.825175 13.459301 Fungi 4751 Fungi Fungi 313 5.989999999999998e-81   NTclustered gi|82398540|gb|DQ273807.1| 34480 g12847 i0 99.419 100.005813953488 172 1 100 0 1 172 2995 2824 Basidiobolus ranarum isolate AFTOL-ID 301 28S ribosomal RNA gene, partial sequence blastn 17201 313 1 Eukaryota Opisthokonta Fungi Zoopagomycota Basidiobolomycetes Basidiobolales Basidiobolaceae Basidiobolus Basidiobolus ranarum
21463497 21463497 PRJNA299585_S_NODE_8077_length_252_cov_5.354260_g7847_i0 PRJNA299585 8077 252 5.35426 13.4927352 Malassezia 55193 Fungi Fungi 466 6.89e-127   NTclustered gi|37575174|gb|AY387222.1| 55194 g7847 i0 100 100 252 0 100 0 1 252 12 263 Malassezia furfur strain TPB1 large subunit ribosomal RNA gene, partial sequence blastn 25200 466 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia furfur
22051705 22051705 PRJNA299585_S_NODE_3418_length_484_cov_4.778022_g3195_i0 PRJNA299585 3418 484 4.778022 23.12562648 uncultured Ascomycota 175243 Fungi Fungi 665 0   NTclustered gi|313483124|gb|HQ433129.1| 175243 g3195 i0 99.189 75.2190082644628 370 2 76 1 1 369 335 704 Uncultured Ascomycota clone asc07192 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 36406 665 1 Eukaryota Opisthokonta Fungi Ascomycota         uncultured Ascomycota

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;