RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA290839" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA290839 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
372910 372910 PRJNA290839_P_NODE_601_length_330_cov_1.684825_g580_i0 PRJNA290839 601 330 1.684825 5.5599225 Oryza sativa 4530 Plants Plants 510 4.26e-140   NTclustered gi|32993583|dbj|AK108374.1| 39947 g580 i0 94.545 66.9727272727273 330 18 100 0 1 330 671 342 Oryza sativa Japonica Group cDNA clone:002-142-D11, full insert sequence blastn 22101 510 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
9300980 9300980 PRJNA290839_P_NODE_728_length_300_cov_3.409692_g707_i0 PRJNA290839 728 300 3.409692 10.229076 Oryza sativa 4530 Plants Plants 481 2.999999999999999e-131   NTclustered gi|116641691|emb|CT837030.1| 39946 g707 i0 95.652 0.996666666666667 299 13 99 0 1 299 16 314 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI012C10, full insert sequence blastn 299 481 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
11851579 11851579 PRJNA290839_P_NODE_50_length_1372_cov_3.555812_g33_i0 PRJNA290839 50 1372 3.555812 48.78574064 Oryza sativa 4530 Plants Plants 1105 0   NTclustered gi|32993583|dbj|AK108374.1| 39947 g33 i0 91.076 48.7463556851312 818 72 60 1 555 1372 1 817 Oryza sativa Japonica Group cDNA clone:002-142-D11, full insert sequence blastn 66880 1105 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
12537998 12537998 PRJNA290839_P_NODE_890_length_271_cov_1.570707_g869_i0 PRJNA290839 890 271 1.570707 4.25661597 Poaceae 4479 Plants Plants 501 2.05e-137   NTclustered gi|1214171912|gb|KY636002.1| 4483 g869 i0 100 192 271 0 100 0 1 271 97769 97499 Aegilops bicornis voucher AE 788 chloroplast, partial genome blastn 52032 501 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Aegilops Aegilops bicornis
16361968 16361968 PRJNA290839_P_NODE_973_length_257_cov_1.684783_g952_i0 PRJNA290839 973 257 1.684783 4.32989231 Streptophyta 35493 Plants Plants 161 3.72e-35   NTclustered gi|1173203591|dbj|AK407401.1| 3369 g952 i0 78.175 58.0972762645914 252 55 98 0 2 253 307 558 Cryptomeria japonica mRNA, clone: CFFL011_E08, expressed in female strobili blastn 14931 161 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Cupressales Cupressaceae Cryptomeria Cryptomeria japonica
21461252 21461252 PRJNA290839_P_NODE_957_length_259_cov_1.344086_g936_i0 PRJNA290839 957 259 1.344086 3.48118274 Poaceae 4479 Plants Plants 479 9.13e-131   NTclustered gi|1214171912|gb|KY636002.1| 4483 g936 i0 100 196 259 0 100 0 1 259 96521 96779 Aegilops bicornis voucher AE 788 chloroplast, partial genome blastn 50764 479 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Aegilops Aegilops bicornis
23324952 23324952 PRJNA290839_P_NODE_1299_length_248_cov_0.885714_g1278_i0 PRJNA290839 1299 248 0.885714 2.19657072 Populus nigra 3691 Plants Plants 145 3.6e-30   NTclustered gi|2645385715|ref|XM_062107710.1| 3691 g1278 i0 80.952 52.2661290322581 189 30 75 6 49 234 331 146 PREDICTED: Populus nigra large ribosomal subunit protein uL15x-like (LOC133688281), mRNA blastn 12962 145 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Salicaceae Populus Populus nigra

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;