RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA290839" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA290839 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8026194 8026194 PRJNA290839_P_NODE_1487_length_245_cov_0.895349_g1466_i0 PRJNA290839 1487 245 0.895349 2.19360505 Gyropaigne lefevrei 86637 Euglenozoa other_Eukaryota 305 1.54e-78   NTclustered gi|21239048|gb|AF263946.1| 86637 g1466 i0 91.441 13.3387755102041 222 19 91 0 21 242 302 81 Gyropaigne lefevrei paraxonemal rod protein PAR 1 mRNA, partial cds blastn 3268 305 1 Eukaryota Discoba   Euglenozoa Euglenida Rhabdomonadales Astasiidae Gyropaigne Gyropaigne lefevrei
8026197 8026197 PRJNA290839_P_NODE_1567_length_243_cov_0.911765_g1546_i0 PRJNA290839 1567 243 0.911765 2.21558895 Leishmania martiniquensis 1580590 Euglenozoa other_Eukaryota 207 4.42e-49   NTclustered gi|2787686800|ref|XM_067319977.1| 1580590 g1546 i0 82.553 5.47325102880658 235 41 97 0 9 243 1526 1292 Leishmania martiniquensis uncharacterized protein (LSCM1_02394), partial mRNA blastn 1330 207 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania martiniquensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;