RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA290839" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA290839 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15087093 15087093 PRJNA290839_P_NODE_1332_length_247_cov_0.896552_g1311_i0 PRJNA290839 1332 247 0.896552 2.21448344 Elephantidae 9780 Chordata Chordata 241 4.44e-59   NTclustered gi|2710901988|ref|XM_064293858.1| 9785 g1311 i0 84.874 46.1336032388664 238 36 96 0 2 239 155 392 PREDICTED: Loxodonta africana calmodulin 3 (CALM3), mRNA blastn 11395 241 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Proboscidea Elephantidae Loxodonta Loxodonta africana
23324954 23324954 PRJNA290839_P_NODE_1479_length_245_cov_0.901163_g1458_i0 PRJNA290839 1479 245 0.901163 2.20784935 Mus musculus 10090 Chordata Chordata 453 5.1900000000000006e-123   NTclustered gi|18606171|gb|BC022986.1| 10090 g1458 i0 100 66.9755102040816 245 0 100 0 1 245 2 246 Mus musculus transferrin, mRNA (cDNA clone MGC:29918 IMAGE:5123741), complete cds blastn 16409 453 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;