RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA290839" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA290839 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
372904 372904 PRJNA290839_P_NODE_1501_length_244_cov_0.912281_g1480_i0 PRJNA290839 1501 244 0.912281 2.22596564 Plasmodium vivax 5855 SAR_Eukaryotes SAR_Eukaryotes 130 9.88e-26   NTclustered gi|156098780|ref|XM_001615356.1| 5855 g1480 i0 87.5 1.68032786885246 112 14 46 0 2 113 945 834 Plasmodium vivax spermidine synthase, putative (PVX_092065), mRNA blastn 410 130 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vivax
10576833 10576833 PRJNA290839_P_NODE_329_length_469_cov_1.659091_g308_i0 PRJNA290839 329 469 1.659091 7.78113679 Plasmodium sp. gorilla clade G2 880535 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.004   NTclustered gi|1620167712|ref|XM_028681606.1| 880535 g308 i0 94.595 0.0788912579957356 37 1 8 1 27 62 14964 15000 Plasmodium sp. gorilla clade G2 E3 ubiquitin-protein ligase, putative (PADL01_0825300), partial mRNA blastn 37 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium sp. gorilla clade G2
13126719 13126719 PRJNA290839_P_NODE_591_length_333_cov_1.196154_g570_i0 PRJNA290839 591 333 1.196154 3.98319282 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 483 9.389999999999999e-132   NTclustered gi|829187607|ref|XM_001011429.3| 312017 g570 i0 95.96 6.8018018018018 297 12 89 0 1 297 297 1 Tetrahymena thermophila SB210 40S ribosomal protein S23 partial mRNA blastn 2265 483 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
13126720 13126720 PRJNA290839_P_NODE_71_length_1116_cov_2.725791_g53_i0 PRJNA290839 71 1116 2.725791 30.41982756 Pyrocystis lunula 2972 SAR_Eukaryotes SAR_Eukaryotes 1450 0   NTclustered gi|27450758|gb|AF508263.1| 2972 g53 i0 90.161 98.3440860215054 1118 105 100 5 1 1116 1135 21 Pyrocystis lunula actin mRNA, complete cds blastn 109752 1450 1 Eukaryota Sar     Dinophyceae Gonyaulacales Pyrocystaceae Pyrocystis Pyrocystis lunula
15675638 15675638 PRJNA290839_P_NODE_653_length_317_cov_1.135246_g632_i0 PRJNA290839 653 317 1.135246 3.59872982 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 339 2.0399999999999995e-88   NTclustered gi|829143070|ref|XM_001009843.3| 312017 g632 i0 88.809 0.873817034700315 277 29 87 2 40 315 849 1124 Tetrahymena thermophila SB210 papain family cysteine protease partial mRNA blastn 277 339 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
19498822 19498822 PRJNA290839_P_NODE_716_length_303_cov_1.013043_g695_i0 PRJNA290839 716 303 1.013043 3.06952029 Poteriospumella lacustris 1117027 SAR_Eukaryotes SAR_Eukaryotes 353 6.91e-93   NTclustered gi|161015559|gb|EF577184.1| 1117027 g695 i0 88 37.2541254125413 300 34 99 2 2 300 514 812 Spumella-like flagellate JBM10 beta-tubulin gene, partial cds blastn 11288 353 1 Eukaryota Sar     Chrysophyceae Chromulinales Dinobryaceae Poteriospumella Poteriospumella lacustris
24599009 24599009 PRJNA290839_P_NODE_840_length_280_cov_1.130435_g819_i0 PRJNA290839 840 280 1.130435 3.165218 Actinosphaerium nucleofilum 238767 SAR_Eukaryotes SAR_Eukaryotes 435 2.19e-117   NTclustered gi|33089895|gb|AY283757.1| 238767 g819 i0 94.643 99.0285714285714 280 15 100 0 1 280 365 86 Actinosphaerium nucleofilum isolate Anu4_3 actin gene, partial cds blastn 27728 435 1 Eukaryota Sar     Actinophryidae     Actinosphaerium Actinosphaerium nucleofilum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;