RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA289590" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA289590 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
372835 372835 PRJNA289590_P_NODE_7601_length_344_cov_4.576271_g7377_i0 PRJNA289590 7601 344 4.576271 15.74237224 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 239 2.33e-58   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g7377 i0 79.37 98.0755813953488 349 64 99 4 1 342 415 68 Aphanomyces astaci polyubiquitin mRNA blastn 33738 239 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
14401407 14401407 PRJNA289590_P_NODE_17872_length_212_cov_1.595092_g17648_i0 PRJNA289590 17872 212 1.595092 3.38159504 Achlya bisexualis 4766 SAR_Eukaryotes SAR_Eukaryotes 222 1.34e-53   NTclustered gi|2289|emb|X59936.1| 4766 g17648 i0 88.172 81.0754716981132 186 22 88 0 27 212 1 186 A.bisexualis gene for actin blastn 17188 222 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya bisexualis
20774238 20774238 PRJNA289590_P_NODE_4557_length_472_cov_1.855792_g4337_i0 PRJNA289590 4557 472 1.855792 8.75933824 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 243 2.54e-59   NTclustered gi|673019759|ref|XM_008865619.1| 157072 g4337 i0 79.05 16.7902542372881 358 71 75 4 60 415 127 482 Aphanomyces invadans 40S ribosomal protein S23 mRNA blastn 7925 243 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;