RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA287283" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA287283 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1059229 1059229 PRJNA287283_P_NODE_5581_length_248_cov_2.000000_g5357_i0 PRJNA287283 5581 248 2 4.96 Aves 8782 Chordata Chordata 54.7 0.006   NTclustered gi|2921976555|gb|CP130425.1| 8855 g5357 i0 96.875 0.362903225806452 32 1 13 0 217 248 6109950 6109919 Cairina moschata breed yongchun chromosome W blastn 90 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cairina Cairina moschata
1646941 1646941 PRJNA287283_P_NODE_10582_length_174_cov_2.314050_g10358_i0 PRJNA287283 10582 174 2.31405 4.026447 Apteryx mantelli 2696672 Chordata Chordata 54.7 0.004   NTclustered gi|840016890|emb|LK066393.1| 202946 g10358 i0 100 0.166666666666667 29 0 17 0 76 104 207549 207577 Apteryx australis mantelli genome assembly AptMant0, scaffold scaffold1803 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx mantelli
8025469 8025469 PRJNA287283_P_NODE_6087_length_234_cov_1.165746_g5863_i0 PRJNA287283 6087 234 1.165746 2.72784564 Apteryx mantelli 2696672 Chordata Chordata 56.5 0.002   NTclustered gi|840014910|emb|LK065134.1| 202946 g5863 i0 100 0.256410256410256 30 0 13 0 72 101 69732 69761 Apteryx australis mantelli genome assembly AptMant0, scaffold scaffold541 blastn 60 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx mantelli
10576134 10576134 PRJNA287283_P_NODE_8789_length_182_cov_0.868217_g8565_i0 PRJNA287283 8789 182 0.868217 1.58015494 Cairina moschata 8855 Chordata Chordata 294 2.33e-75   NTclustered gi|2921976029|gb|CP130399.1| 8855 g8565 i0 96.154 12.0934065934066 182 3 100 1 1 182 5579628 5579805 Cairina moschata breed yongchun chromosome 21 blastn 2201 294 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cairina Cairina moschata
14401174 14401174 PRJNA287283_P_NODE_9032_length_181_cov_0.875000_g8808_i0 PRJNA287283 9032 181 0.875 1.58375 Ovis aries 9940 Chordata Chordata 239 1.0999999999999999e-58   NTclustered gi|2607130799|ref|XR_009599906.1| 9940 g8808 i0 90.96 389.447513812155 177 16 98 0 5 181 3257 3081 PREDICTED: Ovis aries uncharacterized LOC121819110 (LOC121819110), transcript variant X2, ncRNA blastn 70490 239 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries
14401175 14401175 PRJNA287283_P_NODE_9252_length_180_cov_0.881890_g9028_i0 PRJNA287283 9252 180 0.88189 1.587402 Cairina moschata 8855 Chordata Chordata 285 1.38e-72   NTclustered gi|2921976040|gb|CP130409.1| 8855 g9028 i0 95 311.338888888889 180 9 100 0 1 180 2771230 2771051 Cairina moschata breed yongchun chromosome 30 blastn 56041 285 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cairina Cairina moschata
23324229 23324229 PRJNA287283_P_NODE_9439_length_179_cov_0.888889_g9215_i0 PRJNA287283 9439 179 0.888889 1.59111131 Cairina moschata 8855 Chordata Chordata 322 1.05e-83   NTclustered gi|2921976050|gb|CP130419.1| 8855 g9215 i0 98.883 1.56983240223464 179 2 100 0 1 179 14716696 14716518 Cairina moschata breed yongchun chromosome 4 blastn 281 322 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cairina Cairina moschata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;