RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA285816" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Viruses · 14 ✖

bioproject 1

  • PRJNA285816 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2922691 2922691 PRJNA285816_S_NODE_23563_length_170_cov_1.165289_g23461_i0 PRJNA285816 23563 170 1.165289 1.9809913 Caudoviricetes sp. 2832643 Viruses Viruses 291 2.77e-74   NTclustered gi|2058128472|tpg|BK034062.1| 2832643 g23461 i0 97.633 425.482352941176 169 4 99 0 1 169 39871 39703 MAG TPA_asm: Caudoviricetes sp. isolate ctw8r9, partial genome blastn 72332 291 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
4199017 4199017 PRJNA285816_S_NODE_13424_length_208_cov_0.981132_g13322_i0 PRJNA285816 13424 208 0.981132 2.04075456 Betacoronavirus pandemicum 3418604 Viruses Viruses 76.8 1.08e-9   NTclustered gi|2565365187|emb|OY637518.1| 2697049 g13322 i0 100 21.0913461538462 41 0 20 0 1 41 11672 11632 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4387 76.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
8025231 8025231 PRJNA285816_S_NODE_18207_length_186_cov_5.532847_g18105_i0 PRJNA285816 18207 186 5.532847 10.29109542 Betacoronavirus pandemicum 3418604 Viruses Viruses 60.2 9.5e-5   NTclustered gi|2560517252|emb|OY702345.1| 2697049 g18105 i0 100 4.98924731182796 32 0 17 0 155 186 26488 26519 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 928 60.2 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
9300249 9300249 PRJNA285816_S_NODE_9888_length_232_cov_1.098361_g9786_i0 PRJNA285816 9888 232 1.098361 2.54819752 Parapoxvirus orf 3431389 Viruses Viruses 65.8 2.66e-6   NTclustered gi|2755084565|gb|PP943426.1| 10258 g9786 i0 93.333 17.3706896551724 45 2 19 1 1 45 121051 121094 Orf virus isolate FX17, partial genome blastn 4030 65.8 1 Viruses   Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae Parapoxvirus Parapoxvirus orf
10576081 10576081 PRJNA285816_S_NODE_6089_length_282_cov_1.562232_g5987_i0 PRJNA285816 6089 282 1.562232 4.40549424 Paenibacillus phage Pahemo 2835998 Viruses Viruses 84.2 9.22e-12   NTclustered gi|2044627981|gb|MW927522.1| 2835998 g5987 i0 96.154 15.3794326241135 52 1 18 1 1 51 41888 41939 Paenibacillus phage Pahemo, complete genome blastn 4337 84.2 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes     Fernvirus Paenibacillus phage Pahemo
12537624 12537624 PRJNA285816_S_NODE_17610_length_189_cov_1.042857_g17508_i0 PRJNA285816 17610 189 1.042857 1.97099973 Viruses 10239 Viruses Viruses 71.3 4.48e-8   NTclustered gi|2167415105|tpg|BK059322.1| 12271 g17508 i0 100 23.2380952380952 38 0 20 0 152 189 39 2 TPA_asm: Arabis mosaic virus isolate SRR5788585_ArMV segment RNA1, complete sequence blastn 4392 71.3 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Secoviridae Nepovirus Nepovirus arabis
13125698 13125698 PRJNA285816_S_NODE_12151_length_215_cov_1.566265_g12049_i0 PRJNA285816 12151 215 1.566265 3.36746975 Sopawol virus 3131668 Viruses Viruses 274 3.72e-69   NTclustered gi|2717323098|gb|PP173969.1| 3131668 g12049 i0 90.431 44.0837209302326 209 18 97 2 1 208 325 118 MAG: Sopawol virus isolate SP1B_k141_158324 genomic sequence blastn 9478 274 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Sopawol virus
13125708 13125708 PRJNA285816_S_NODE_12911_length_211_cov_0.962963_g12809_i0 PRJNA285816 12911 211 0.962963 2.03185193 Betacoronavirus pandemicum 3418604 Viruses Viruses 63.9 8.56e-6   NTclustered gi|2557389902|emb|OY653400.1| 2697049 g12809 i0 97.368 17.0758293838863 38 0 18 1 175 211 19642 19679 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 3603 63.9 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
16949512 16949512 PRJNA285816_S_NODE_4914_length_309_cov_23.915385_g4812_i0 PRJNA285816 4914 309 23.915385 73.89853965 Chrocagost virus 3129398 Viruses Viruses 296 1.21e-75   NTclustered gi|2717317482|gb|PP171846.1| 3129398 g4812 i0 88.525 202.236245954693 244 28 79 0 5 248 5619 5862 MAG: Chrocagost virus isolate CC1A_k141_84256 genomic sequence blastn 62491 296 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes       Chrocagost virus
19497843 19497843 PRJNA285816_S_NODE_14416_length_202_cov_36.084967_g14314_i0 PRJNA285816 14416 202 36.084967 72.89163334 Nepovirus arabis 3047374 Viruses Viruses 75 3.75e-9   NTclustered gi|2167415105|tpg|BK059322.1| 12271 g14314 i0 97.674 19.4207920792079 43 1 21 0 1 43 2 44 TPA_asm: Arabis mosaic virus isolate SRR5788585_ArMV segment RNA1, complete sequence blastn 3923 75 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Secoviridae Nepovirus Nepovirus arabis
20773351 20773351 PRJNA285816_S_NODE_10477_length_227_cov_1.191011_g10375_i0 PRJNA285816 10477 227 1.191011 2.70359497 Parapoxvirus orf 3431389 Viruses Viruses 54.7 0.006   NTclustered gi|2755084441|gb|PP943425.1| 10258 g10375 i0 100 1.36123348017621 29 0 13 0 199 227 67828 67800 Orf virus isolate FX10, partial genome blastn 309 54.7 1 Viruses   Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae Parapoxvirus Parapoxvirus orf
20773655 20773655 PRJNA285816_S_NODE_8097_length_251_cov_1.514851_g7995_i0 PRJNA285816 8097 251 1.514851 3.80227601 Coguvirus henanense 3059897 Viruses Viruses 56.5 0.002   NTclustered gi|2058277675|dbj|LC636074.1| 2034157 g7995 i0 100 0.231075697211155 30 0 12 0 222 251 31 2 Watermelon crinkle leaf-associated virus 2 Ju-01-WCLaV2 MP gene for putative movement protein, complete cds blastn 58 56.5 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Coguvirus Coguvirus henanense
21460903 21460903 PRJNA285816_S_NODE_30377_length_154_cov_10.133333_g30275_i0 PRJNA285816 30377 154 10.133333 15.60533282 root 1 Root_unresolved Root_unresolved 276 6.890000000000001e-70   NTclustered gi|2620236085|gb|OR777220.1| 10515 g30275 i0 100 96.7532467532468 149 0 97 0 6 154 15173 15025 Human adenovirus 2 isolate HAdV-C2/USA/13R1/2017, complete genome blastn 14900 276 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
23323897 23323897 PRJNA285816_S_NODE_10839_length_224_cov_1.771429_g10737_i0 PRJNA285816 10839 224 1.771429 3.96800096 Betacoronavirus pandemicum 3418604 Viruses Viruses 56.5 0.002   NTclustered gi|2557646044|emb|OY675404.1| 2697049 g10737 i0 100 9.12053571428571 30 0 13 0 195 224 18438 18467 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 2043 56.5 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;