RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA285816" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA285816 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5475588 5475588 PRJNA285816_S_NODE_9585_length_234_cov_2.237838_g9483_i0 PRJNA285816 9585 234 2.237838 5.23654092 Sycon ciliatum 27933 Porifera other_Eukaryota 102 2.05e-17   NTclustered gi|2732940014|ref|XM_065337196.1| 27933 g9483 i0 83.186 2.61538461538462 113 17 48 2 121 232 1034 923 PREDICTED: Sycon ciliatum procathepsin L-like (LOC135824458), mRNA blastn 612 102 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
14401120 14401120 PRJNA285816_S_NODE_5752_length_288_cov_13.598326_g5650_i0 PRJNA285816 5752 288 13.598326 39.16317888 Sycon ciliatum 27933 Porifera other_Eukaryota 163 1.18e-35   NTclustered gi|2732900686|ref|XM_065338289.1| 27933 g5650 i0 77.778 1.92708333333333 279 53 95 9 1 273 2174 1899 PREDICTED: Sycon ciliatum major vault protein-like (LOC135825668), mRNA blastn 555 163 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
21460850 21460850 PRJNA285816_S_NODE_12077_length_216_cov_0.910180_g11975_i0 PRJNA285816 12077 216 0.91018 1.9659888 Metazoa 33208 Porifera other_Eukaryota 52.8 0.019   NTclustered gi|2732934369|ref|XM_065334256.1| 27933 g11975 i0 100 0.259259259259259 28 0 13 0 142 169 1595 1568 PREDICTED: Sycon ciliatum nucleolar protein 8-like (LOC135821187), mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;