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contig_metadata

19 rows where analysis = "blastn", bioproject = "PRJNA285816" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 19 ✖

tax_clade 1

bioproject 1

  • PRJNA285816 · 19 ✖

analysis 1

  • blastn · 19 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
371871 371871 PRJNA285816_S_NODE_11121_length_222_cov_1.502890_g11019_i0 PRJNA285816 11121 222 1.50289 3.3364158 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 143 1.14e-29   NTclustered gi|2794910559|ref|XM_067891130.1| 164328 g11019 i0 85.401 4.42792792792793 137 20 62 0 2 138 422 286 Phytophthora ramorum 3-oxoacyl-[acyl-carrier-protein] reductase FabG (KRP23_5997), partial mRNA blastn 983 143 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
371893 371893 PRJNA285816_S_NODE_12801_length_211_cov_1.629630_g12699_i0 PRJNA285816 12801 211 1.62963 3.4385193 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.019   NTclustered gi|187467924|emb|CU694972.3| 123356 g12699 i0 100 0.132701421800948 28 0 13 0 121 148 53066 53039 H.parasitica DNA sequence from clone HpEmoy2-18K24, complete sequence blastn 28 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
4199052 4199052 PRJNA285816_S_NODE_1604_length_520_cov_10.016985_g1504_i0 PRJNA285816 1604 520 10.016985 52.088322 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 243 2.82e-59   NTclustered gi|673019759|ref|XM_008865619.1| 157072 g1504 i0 79.05 15.2403846153846 358 71 68 4 113 468 482 127 Aphanomyces invadans 40S ribosomal protein S23 mRNA blastn 7925 243 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
6749578 6749578 PRJNA285816_S_NODE_1226_length_590_cov_7.293900_g1135_i0 PRJNA285816 1226 590 7.2939 43.03401 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 6.83e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g1135 i0 80.533 56.9372881355932 375 65 62 4 191 558 441 68 Aphanomyces astaci polyubiquitin mRNA blastn 33593 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
6749733 6749733 PRJNA285816_S_NODE_2426_length_428_cov_1.604222_g2324_i0 PRJNA285816 2426 428 1.604222 6.86607016 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 200 1.3899999999999999e-46   NTclustered gi|813158096|ref|XM_012347005.1| 695850 g2324 i0 80.769 37.838785046729 260 46 60 4 169 426 605 348 Saprolegnia parasitica CBS 223.65 NADH dehydrogenase iron-sulfur protein 8 mRNA blastn 16195 200 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
6749822 6749822 PRJNA285816_S_NODE_4466_length_323_cov_1.120438_g4364_i0 PRJNA285816 4466 323 1.120438 3.61901474 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 254 7.75e-63   NTclustered gi|166036871|emb|CU360758.1| 100861 g4364 i0 80.805 74.0866873065015 323 62 100 0 1 323 750 428 Aphanomyces euteiches cDNA blastn 23930 254 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
9299955 9299955 PRJNA285816_S_NODE_12388_length_214_cov_0.939394_g12286_i0 PRJNA285816 12388 214 0.939394 2.01030316 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 255 1.34e-63   NTclustered gi|2795047822|ref|XM_067933895.1| 4785 g12286 i0 89.216 95.7990654205608 204 22 95 0 1 204 1104 901 Phytophthora cinnamomi Inositol-3-phosphate synthase (IUM83_09454), partial mRNA blastn 20501 255 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
9300007 9300007 PRJNA285816_S_NODE_1708_length_504_cov_6.903297_g1606_i0 PRJNA285816 1708 504 6.903297 34.79261688 Phytophthora clandestina 89334 SAR_Eukaryotes SAR_Eukaryotes 357 9.32e-94   NTclustered gi|2314988938|ref|NC_067073.1| 89334 g1606 i0 84.807 71.5496031746032 362 47 71 7 8 366 33713 34069 Phytophthora clandestina voucher P3942 mitochondrion, complete genome blastn 36061 357 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora clandestina
9300043 9300043 PRJNA285816_S_NODE_19568_length_182_cov_1.142857_g19466_i0 PRJNA285816 19568 182 1.142857 2.07999974 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 156 1.15e-33   NTclustered gi|813142340|ref|XM_012343869.1| 695850 g19466 i0 87.407 41.8626373626374 135 17 74 0 21 155 287 153 Saprolegnia parasitica CBS 223.65 40S ribosomal protein S6 mRNA blastn 7619 156 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
12537635 12537635 PRJNA285816_S_NODE_20290_length_179_cov_2.746154_g20188_i0 PRJNA285816 20290 179 2.746154 4.91561566 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 80.5 6.96e-11   NTclustered gi|2314988938|ref|NC_067073.1| 89334 g20188 i0 92.727 28.1899441340782 55 4 31 0 90 144 33089 33143 Phytophthora clandestina voucher P3942 mitochondrion, complete genome blastn 5046 80.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora clandestina
15086752 15086752 PRJNA285816_S_NODE_25152_length_167_cov_1.788136_g25050_i0 PRJNA285816 25152 167 1.788136 2.98618712 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 143 8.08e-30   NTclustered gi|2795036376|ref|XM_067936376.1| 4785 g25050 i0 84.247 3.50299401197605 146 23 87 0 18 163 392 247 Phytophthora cinnamomi 40S ribosomal protein S16 (IUM83_11796), partial mRNA blastn 585 143 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
15674667 15674667 PRJNA285816_S_NODE_17813_length_188_cov_1.122302_g17711_i0 PRJNA285816 17813 188 1.122302 2.10992776 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 93.5 9.49e-15   NTclustered gi|2795032265|ref|XM_067933159.1| 4785 g17711 i0 88.462 0.654255319148936 78 7 41 2 105 181 221 145 Phytophthora cinnamomi cyclin-dependent kinase regulatory subunit 1 (IUM83_08766), partial mRNA blastn 123 93.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
15674868 15674868 PRJNA285816_S_NODE_6593_length_272_cov_2.672646_g6491_i0 PRJNA285816 6593 272 2.672646 7.26959712 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 243 1.38e-59   NTclustered gi|2795016949|ref|XM_067930458.1| 4785 g6491 i0 84.337 87.7389705882353 249 37 91 2 3 250 917 670 Phytophthora cinnamomi protein transporter Sec61 subunit alpha isoform 2 (IUM83_06269), partial mRNA blastn 23865 243 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
19498085 19498085 PRJNA285816_S_NODE_8756_length_243_cov_1.530928_g8654_i0 PRJNA285816 8756 243 1.530928 3.72015504 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 243 1.2100000000000004e-59   NTclustered gi|2794920874|ref|XM_067880626.1| 164328 g8654 i0 85.169 44.4650205761317 236 35 97 0 5 240 1331 1096 Phytophthora ramorum Adenosylhomocysteinase (KRP23_10205), partial mRNA blastn 10805 243 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
20773358 20773358 PRJNA285816_S_NODE_1097_length_620_cov_8.094571_g1013_i0 PRJNA285816 1097 620 8.094571 50.1863402 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 204 1.6e-47   NTclustered gi|2794905809|ref|XM_067889902.1| 164328 g1013 i0 79.577 9.98870967741935 284 58 46 0 238 521 302 19 Phytophthora ramorum 13 kDa ribonucleoprotein-associated protein (KRP23_4892), partial mRNA blastn 6193 204 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
20773498 20773498 PRJNA285816_S_NODE_22577_length_172_cov_3.569106_g22475_i0 PRJNA285816 22577 172 3.569106 6.13886232 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 182 1.76e-41   NTclustered gi|673019533|ref|XM_008865506.1| 157072 g22475 i0 85.882 85.6918604651163 170 24 99 0 1 170 326 157 Aphanomyces invadans hypothetical protein mRNA blastn 14739 182 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
20773664 20773664 PRJNA285816_S_NODE_897_length_670_cov_1.969404_g828_i0 PRJNA285816 897 670 1.969404 13.1950068 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 407 1.24e-108   NTclustered gi|1219685856|gb|KY965925.1| 1440116 g828 i0 80.741 76.5746268656716 540 88 79 15 94 622 737 203 Lagenidium giganteum f. caninum isolate UF15-01 heat shock protein 90 (hsp90) gene, partial cds blastn 51305 407 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
22048584 22048584 PRJNA285816_S_NODE_3938_length_341_cov_2.681507_g3836_i0 PRJNA285816 3938 341 2.681507 9.14393887 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 198 3.909999999999999e-46   NTclustered gi|669138905|ref|XM_008606799.1| 1156394 g3836 i0 77.391 19.891495601173 345 70 100 8 1 341 994 1334 Saprolegnia diclina VS20 seryl-tRNA synthetase mRNA blastn 6783 198 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
24598080 24598080 PRJNA285816_S_NODE_1860_length_486_cov_8.750572_g1758_i0 PRJNA285816 1860 486 8.750572 42.52777992 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 156 3.51e-33   NTclustered gi|1111669769|ref|NC_032052.1| 157072 g1758 i0 76.645 32.9506172839506 304 58 61 11 42 337 3468 3766 Aphanomyces invadans isolate NJM9701 mitochondrion, complete genome blastn 16014 156 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;