RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA285816" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA285816 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2922776 2922776 PRJNA285816_S_NODE_3283_length_370_cov_6.495327_g3181_i0 PRJNA285816 3283 370 6.495327 24.0327099 Levipalatum texanum 1486449 Nematoda Nematoda 200 1.19e-46   NTclustered gi|610559467|gb|KJ395558.1| 1486449 g3181 i0 82.158 2.83513513513514 241 35 64 6 69 305 148 384 Levipalatum texanum ribosomal protein (rpl-23) gene, partial cds blastn 1049 200 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Levipalatum Levipalatum texanum
5475525 5475525 PRJNA285816_S_NODE_29645_length_162_cov_0.893805_g29543_i0 PRJNA285816 29645 162 0.893805 1.4479641 Viguiera euryoptera 2710692 Nematoda Nematoda 172 9.92e-39   NTclustered gi|1811126799|gb|MT086833.1| 2710692 g29543 i0 89.13 19.9259259259259 138 15 85 0 25 162 2553 2690 Viguiera euryoptera isolate K_21 large subunit ribosomal RNA gene, partial sequence blastn 3228 172 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Habronematidae Viguiera Viguiera euryoptera
6749628 6749628 PRJNA285816_S_NODE_1666_length_510_cov_6.661605_g1564_i0 PRJNA285816 1666 510 6.661605 33.9741855 Pristionchus hoplostomus 1355913 Nematoda Nematoda 167 1.7100000000000002e-36   NTclustered gi|524845312|gb|KC819366.1| 1355913 g1564 i0 81.166 24.2156862745098 223 28 42 11 251 466 264 49 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 12350 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
14401080 14401080 PRJNA285816_S_NODE_2872_length_395_cov_3.135838_g2770_i0 PRJNA285816 2872 395 3.135838 12.3865601 Panagrellus redivivus 6233 Nematoda Nematoda 206 2.7399999999999997e-48   NTclustered gi|23306675|gb|AY137471.1| 6233 g2770 i0 76.322 71.2962025316456 397 87 99 7 1 392 1116 722 Panagrellus redivivus heat shock protein 70-C mRNA, complete cds blastn 28162 206 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrellus Panagrellus redivivus
19497989 19497989 PRJNA285816_S_NODE_27556_length_164_cov_1.347826_g27454_i0 PRJNA285816 27556 164 1.347826 2.21043464 Necator americanus 51031 Nematoda Nematoda 111 2.23e-20   NTclustered gi|2707568991|ref|XM_013446529.2| 51031 g27454 i0 79.87 5.3719512195122 154 29 93 2 1 153 1033 1185 Necator americanus uncharacterized protein (RB195_009143), partial mRNA blastn 881 111 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
19498092 19498092 PRJNA285816_S_NODE_9276_length_237_cov_2.074468_g9174_i0 PRJNA285816 9276 237 2.074468 4.91648916 Loa loa 7209 Nematoda Nematoda 52.8 0.021   NTclustered gi|1158602767|ref|XM_020451217.1| 7209 g9174 i0 100 0.118143459915612 28 0 12 0 70 97 236 263 Loa loa hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
20773448 20773448 PRJNA285816_S_NODE_1837_length_488_cov_8.391800_g1735_i0 PRJNA285816 1837 488 8.3918 40.951984 Caenorhabditis briggsae 6238 Nematoda Nematoda 326 2.54e-84   NTclustered gi|268559799|ref|XM_002646027.1| 6238 g1735 i0 86.986 62.5614754098361 292 34 59 4 14 303 1018 1307 Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA blastn 30530 326 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;