RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA285816" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA285816 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6161954 6161954 PRJNA285816_S_NODE_23605_length_169_cov_7.691667_g23503_i0 PRJNA285816 23605 169 7.691667 12.99891723 Metazoa 33208 Echinodermata other_Eukaryota 100 4.97e-17   NTclustered gi|1752384484|ref|XM_030995275.1| 7668 g23503 i0 81.301 34.9408284023669 123 23 73 0 47 169 1291 1169 PREDICTED: Strongylocentrotus purpuratus tubulin alpha-1C chain (LOC762594), mRNA blastn 5905 100 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
19497800 19497800 PRJNA285816_S_NODE_10136_length_230_cov_0.861878_g10034_i0 PRJNA285816 10136 230 0.861878 1.9823194 Lytechinus pictus 7653 Echinodermata other_Eukaryota 62.1 3.41e-5   NTclustered gi|2707353120|ref|XM_054896336.2| 7653 g10034 i0 97.222 3.34782608695652 36 1 16 0 195 230 765 730 PREDICTED: Lytechinus pictus mannose-1-phosphate guanyltransferase beta-like (LOC129257901), mRNA blastn 770 62.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;