RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA285816" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA285816 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5475293 5475293 PRJNA285816_S_NODE_13265_length_209_cov_0.975000_g13163_i0 PRJNA285816 13265 209 0.975 2.03775 Ktedonobacteria bacterium brp13 2717365 Bacteria Bacteria 52.8 0.018   NTclustered gi|1915456248|dbj|AP024096.1| 2717365 g13163 i0 100 0.133971291866029 28 0 13 0 115 142 4159964 4159937 Ktedonobacteria bacterium brp13 DNA, complete genome blastn 28 52.8 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria       Ktedonobacteria bacterium brp13
19497945 19497945 PRJNA285816_S_NODE_24136_length_169_cov_0.866667_g24034_i0 PRJNA285816 24136 169 0.866667 1.46466723 Phototrophicus methaneseepsis 2710758 Bacteria Bacteria 113 6.3800000000000005e-21   NTclustered gi|1932369605|gb|CP062983.1| 2710758 g24034 i0 79.191 303.958579881657 173 28 100 7 1 169 2828870 2829038 Phototrophicus methaneseepsis strain ZRK33 chromosome, complete genome blastn 51369 113 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae Phototrophicus Phototrophicus methaneseepsis
19498012 19498012 PRJNA285816_S_NODE_29356_length_162_cov_0.920354_g29254_i0 PRJNA285816 29356 162 0.920354 1.49097348 Caldilineaceae bacterium 2614250 Bacteria Bacteria 54.7 0.004   NTclustered gi|2893358448|emb|OZ220740.1| 2614250 g29254 i0 100 0.179012345679012 29 0 18 0 38 66 4110601 4110629 MAG: Caldilineaceae bacterium isolate a9c3af8e-fa1b-4b3f-b938-3e58e5a69213 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;