RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA285816" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA285816 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8025144 8025144 PRJNA285816_S_NODE_11467_length_219_cov_3.788235_g11365_i0 PRJNA285816 11467 219 3.788235 8.29623465 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 91.6 4.11e-14   NTclustered gi|219129759|ref|XM_002185013.1| 556484 g11365 i0 100 5.22831050228311 49 0 22 0 1 49 434 482 Phaeodactylum tricornutum CCAP 1055/1 calmoduline (CaM1), mRNA blastn 1145 91.6 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
13125892 13125892 PRJNA285816_S_NODE_2671_length_409_cov_10.080556_g2569_i0 PRJNA285816 2671 409 10.080556 41.22947404 Nitzschia palea 303400 SAR_Eukaryotes SAR_Eukaryotes 750 0   NTclustered gi|586947715|gb|KF913343.1| 303400 g2569 i0 99.756 7.11002444987775 410 0 100 1 1 409 36 445 Nitzschia palea strain M2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 2908 750 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia palea
15674641 15674641 PRJNA285816_S_NODE_1613_length_519_cov_7.300000_g1513_i0 PRJNA285816 1613 519 7.3 37.887 Haslea pseudostrearia 197756 SAR_Eukaryotes SAR_Eukaryotes 193 2.87e-44   NTclustered gi|2328347954|ref|NC_067578.1| 197756 g1513 i0 75.442 24.1579961464355 452 81 85 24 6 444 27900 27466 Haslea pseudostrearia strain SCCAP K-1594 mitochondrion, complete genome blastn 12538 193 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Haslea Haslea pseudostrearia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;