RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA285816" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA285816 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4199175 4199175 PRJNA285816_S_NODE_26364_length_166_cov_0.888889_g26262_i0 PRJNA285816 26364 166 0.888889 1.47555574 Plasmodium cynomolgi 5827 SAR_Eukaryotes SAR_Eukaryotes 60.2 8.31e-5   NTclustered gi|457872679|ref|XM_004223211.1| 1120755 g26262 i0 94.737 0.228915662650602 38 2 23 0 36 73 2741 2704 Plasmodium cynomolgi strain B SNF2 family N-terminal domain containing protein (PCYB_113330) mRNA, complete cds blastn 38 60.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium cynomolgi
14400959 14400959 PRJNA285816_S_NODE_19972_length_180_cov_4.503817_g19870_i0 PRJNA285816 19972 180 4.503817 8.1068706 Cryptosporidium sp. chipmunk genotype I 1280935 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.004   NTclustered gi|2787708203|ref|XM_067344846.1| 1280935 g19870 i0 100 0.161111111111111 29 0 16 0 9 37 3790 3818 Cryptosporidium sp. chipmunk genotype I DNA-directed RNA polymerase beta subunit (ELE39_001996), partial mRNA blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium sp. chipmunk genotype I
14401156 14401156 PRJNA285816_S_NODE_9272_length_237_cov_2.218085_g9170_i0 PRJNA285816 9272 237 2.218085 5.25686145 Eimeria mitis 44415 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.021   NTclustered gi|916498609|ref|XM_013494670.1| 44415 g9170 i0 100 0.118143459915612 28 0 12 0 100 127 1105 1132 Eimeria mitis uncharacterized protein (EMH_0032770), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis
24598014 24598014 PRJNA285816_S_NODE_13900_length_205_cov_1.955128_g13798_i0 PRJNA285816 13900 205 1.955128 4.0080124 Eimeria maxima 5804 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.005   NTclustered gi|915125684|ref|XM_013478652.1| 5804 g13798 i0 100 3.41951219512195 29 0 14 0 147 175 1372 1400 Eimeria maxima NADPH-dependent oxidoreductase, putative partial mRNA blastn 701 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;