RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA285816" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 6 ✖

bioproject 1

  • PRJNA285816 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
372008 372008 PRJNA285816_S_NODE_22541_length_173_cov_0.927419_g22439_i0 PRJNA285816 22541 173 0.927419 1.60443487 Fusobacterium gastrosuis 1755100 Bacteria Bacteria 248 1.73e-61   NTclustered gi|1795735174|emb|LT607734.1| 1755100 g22439 i0 92.571 497.086705202312 175 9 100 4 1 173 344470 344298 Fusobacterium sp. P6 Po strain Fusobacterium gastrosuis sp. nov. CDW1, P6 Po genome assembly, chromosome: chr blastn 85996 248 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium gastrosuis
3609668 3609668 PRJNA285816_S_NODE_14503_length_202_cov_1.490196_g14401_i0 PRJNA285816 14503 202 1.490196 3.01019592 Fusobacterium 848 Bacteria Bacteria 335 1.5599999999999993e-87   NTclustered gi|2704973964|gb|CP077133.1| 851 g14401 i0 96.985 438.777227722772 199 6 99 0 1 199 2004906 2005104 Fusobacterium nucleatum strain KCOM3205 chromosome, complete genome blastn 88633 335 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
7437077 7437077 PRJNA285816_S_NODE_28446_length_163_cov_1.254386_g28344_i0 PRJNA285816 28446 163 1.254386 2.04464918 Leptotrichia 32067 Bacteria Bacteria 274 2.66e-69   NTclustered gi|631253196|ref|NR_114394.1| 40542 g28344 i0 96.933 100 163 5 100 0 1 163 587 749 Leptotrichia buccalis strain C-1013-b 16S ribosomal RNA, partial sequence blastn 16300 276 0.992753623188406 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis
18910613 18910613 PRJNA285816_S_NODE_9495_length_235_cov_1.580645_g9393_i0 PRJNA285816 9495 235 1.580645 3.71451575 Fusobacterium 848 Bacteria Bacteria 424 3.87e-114   NTclustered gi|2444100754|gb|CP117525.1| 851 g9393 i0 99.149 488.83829787234 235 2 100 0 1 235 177240 177006 Fusobacterium nucleatum strain FNV chromosome, complete genome blastn 114877 427 0.992974238875878 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
24011047 24011047 PRJNA285816_S_NODE_20319_length_179_cov_1.992308_g20217_i0 PRJNA285816 20319 179 1.992308 3.56623132 Fusobacterium 848 Bacteria Bacteria 331 1.74e-86   NTclustered gi|2705003210|gb|CP084117.1| 851 g20217 i0 100 487.463687150838 179 0 100 0 1 179 1488502 1488680 Fusobacterium nucleatum strain KCOM3486 chromosome, complete genome blastn 87256 331 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
25285232 25285232 PRJNA285816_S_NODE_27560_length_164_cov_1.339130_g27458_i0 PRJNA285816 27560 164 1.33913 2.1961732 Fusobacterium 848 Bacteria Bacteria 298 1.59e-76   NTclustered gi|2705032171|gb|CP084140.1| 851 g27458 i0 99.39 488.993902439024 164 1 100 0 1 164 62996 62833 Fusobacterium nucleatum strain KCOM3187 chromosome, complete genome blastn 80195 298 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;