RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA285816" and tax_kingdom = "Bamfordvirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

  • Bamfordvirae · 3 ✖

bioproject 1

  • PRJNA285816 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9300249 9300249 PRJNA285816_S_NODE_9888_length_232_cov_1.098361_g9786_i0 PRJNA285816 9888 232 1.098361 2.54819752 Parapoxvirus orf 3431389 Viruses Viruses 65.8 2.66e-6   NTclustered gi|2755084565|gb|PP943426.1| 10258 g9786 i0 93.333 17.3706896551724 45 2 19 1 1 45 121051 121094 Orf virus isolate FX17, partial genome blastn 4030 65.8 1 Viruses   Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae Parapoxvirus Parapoxvirus orf
20773351 20773351 PRJNA285816_S_NODE_10477_length_227_cov_1.191011_g10375_i0 PRJNA285816 10477 227 1.191011 2.70359497 Parapoxvirus orf 3431389 Viruses Viruses 54.7 0.006   NTclustered gi|2755084441|gb|PP943425.1| 10258 g10375 i0 100 1.36123348017621 29 0 13 0 199 227 67828 67800 Orf virus isolate FX10, partial genome blastn 309 54.7 1 Viruses   Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae Parapoxvirus Parapoxvirus orf
21460903 21460903 PRJNA285816_S_NODE_30377_length_154_cov_10.133333_g30275_i0 PRJNA285816 30377 154 10.133333 15.60533282 root 1 Root_unresolved Root_unresolved 276 6.890000000000001e-70   NTclustered gi|2620236085|gb|OR777220.1| 10515 g30275 i0 100 96.7532467532468 149 0 97 0 6 154 15173 15025 Human adenovirus 2 isolate HAdV-C2/USA/13R1/2017, complete genome blastn 14900 276 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;