RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA285816" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJNA285816 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1646761 1646761 PRJNA285816_S_NODE_18862_length_184_cov_1.540741_g18760_i0 PRJNA285816 18862 184 1.540741 2.83496344 Chlorella variabilis 554065 Plants Plants 122 1.1799999999999999e-23   NTclustered gi|552840787|ref|XM_005850079.1| 554065 g18760 i0 91.111 1 90 8 49 0 12 101 146 57 Chlorella variabilis hypothetical protein (CHLNCDRAFT_59606) mRNA, complete cds blastn 184 122 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
11262346 11262346 PRJNA285816_S_NODE_409_length_922_cov_23.387171_g359_i0 PRJNA285816 409 922 23.387171 215.62971662 Eukaryota 2759 Plants Plants 351 8.2e-92   NTclustered gi|1861356367|gb|MT377411.1| 51329 g359 i0 77.467 51.6041214750542 608 124 65 12 173 773 97 698 Polytomella parva clone 0016300147 40S ribosomal protein S2 (RPS2) mRNA, complete cds; plastid blastn 47579 351 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella parva
11850802 11850802 PRJNA285816_S_NODE_7910_length_253_cov_2.014706_g7808_i0 PRJNA285816 7910 253 2.014706 5.09720618 Volvox carteri 3067 Plants Plants 86.1 2.26e-12   NTclustered gi|302831072|ref|XM_002947056.1| 3068 g7808 i0 90.625 0.25296442687747 64 6 25 0 2 65 87 150 Volvox carteri f. nagariensis component of cytosolic 80S ribosome and 60S large subunit (rpl39), partial mRNA blastn 64 86.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
14401140 14401140 PRJNA285816_S_NODE_7752_length_255_cov_2.257282_g7650_i0 PRJNA285816 7752 255 2.257282 5.7560691 Auxenochlorella protothecoides 3075 Plants Plants 215 2.79e-51   NTclustered gi|1102971032|gb|FJ196315.2| 3075 g7650 i0 81.89 82.0470588235294 254 46 99 0 1 254 612 359 Auxenochlorella protothecoides ribosomal protein S5 (RPS5) mRNA, partial cds blastn 20922 215 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
19497808 19497808 PRJNA285816_S_NODE_10996_length_223_cov_1.494253_g10894_i0 PRJNA285816 10996 223 1.494253 3.33218419 Tetraselmis sp. CCMP 881 1812852 Plants Plants 180 8.7e-41   NTclustered gi|1778428824|gb|MN642087.1| 1812852 g10894 i0 81.333 70.8206278026906 225 38 100 3 1 223 41690 41912 Tetraselmis sp. CCMP 881 mitochondrion, complete genome blastn 15793 180 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Tetraselmis Tetraselmis sp. CCMP 881
22048605 22048605 PRJNA285816_S_NODE_6638_length_272_cov_1.098655_g6536_i0 PRJNA285816 6638 272 1.098655 2.9883416 Haematococcus lacustris 44745 Plants Plants 329 1.0299999999999998e-85   NTclustered gi|1279575454|gb|MF683078.1| 44745 g6536 i0 89.961 396.055147058824 259 20 94 6 3 258 2928 2673 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 107727 329 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
22048610 22048610 PRJNA285816_S_NODE_7018_length_266_cov_1.350230_g6916_i0 PRJNA285816 7018 266 1.35023 3.5916118 Chlamydomonas incerta 51695 Plants Plants 163 1.08e-35   NTclustered gi|74272608|gb|DQ122869.1| 51695 g6916 i0 80 3.84210526315789 225 41 84 3 15 237 157 379 Chlamydomonas incerta 40S ribosomal protein S8 mRNA, complete cds blastn 1022 163 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;