RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA285816" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA285816 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2922837 2922837 PRJNA285816_S_NODE_9443_length_235_cov_8.064516_g9341_i0 PRJNA285816 9443 235 8.064516 18.9516126 Meringosphaera mediterranea 2837474 Root_unresolved Root_unresolved 115 2.6500000000000003e-21   NTclustered gi|2526806211|gb|OR195157.1| 2837474 g9341 i0 82.707 36.9617021276596 133 20 56 3 104 235 2949 2819 Meringosphaera mediterranea isolate S7 internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 8686 115 1 Eukaryota Haptista     Centroplasthelida     Meringosphaera Meringosphaera mediterranea
15674726 15674726 PRJNA285816_S_NODE_23473_length_170_cov_1.289256_g23371_i0 PRJNA285816 23473 170 1.289256 2.1917352 Diacronema lutheri 2081491 Haptophyta other_Eukaryota 73.1 1.09e-8   NTclustered gi|61229241|gb|AY841760.1| 2081491 g23371 i0 87.302 0.370588235294118 63 8 37 0 108 170 1137 1075 Pavlova lutheri S-adenosyl-L-homocysteine hydrolase (sahh) mRNA, partial cds blastn 63 73.1 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales Pavlovaceae Diacronema Diacronema lutheri
24598249 24598249 PRJNA285816_S_NODE_4960_length_308_cov_2.320463_g4858_i0 PRJNA285816 4960 308 2.320463 7.14702604 Dicrateria rotunda 2703868 Haptophyta other_Eukaryota 135 2.7700000000000003e-27   NTclustered gi|259419547|emb|FN392562.1| 2703868 g4858 i0 80.541 37.3733766233766 185 29 59 5 1 181 53 234 Imantonia rotunda partial mRNA for calmodulin, contig 03038 blastn 11511 135 1 Eukaryota Haptista   Haptophyta   Isochrysidales Isochrysidaceae Dicrateria Dicrateria rotunda

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;