RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA283169" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA283169 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2922427 2922427 PRJNA283169_P_NODE_4403_length_201_cov_1.210526_g4340_i0 PRJNA283169 4403 201 1.210526 2.43315726 Luteolibacter sp. Populi 3230487 Bacteria Bacteria 355 1.19e-93   NTclustered gi|2774618348|gb|CP161812.1| 3230487 g4340 i0 98.507 290.338308457711 201 3 100 0 1 201 1321144 1320944 Luteolibacter sp. Populi chromosome, complete genome blastn 58358 355 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. Populi
3609536 3609536 PRJNA283169_P_NODE_5463_length_183_cov_1.141791_g5400_i0 PRJNA283169 5463 183 1.141791 2.08947753 Methylacidiphilum (ex Ratnadevi et al. 2023) 511745 Bacteria Bacteria 209 8.74e-50   NTclustered gi|189184875|gb|CP000975.1| 481448 g5400 i0 87.845 112.595628415301 181 18 98 4 1 179 894475 894297 Methylacidiphilum infernorum V4, complete genome blastn 20605 209 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Methylacidiphilae Methylacidiphilales Methylacidiphilaceae Methylacidiphilum (ex Ratnadevi et al. 2023) Candidatus Methylacidiphilum infernorum
6749435 6749435 PRJNA283169_P_NODE_1666_length_314_cov_1.132075_g1604_i0 PRJNA283169 1666 314 1.132075 3.5547155 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 348 3.35e-91   NTclustered gi|226525339|gb|FJ872375.1| 156588 g1604 i0 86.901 315.433121019108 313 38 99 2 2 314 27876 28185 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 99046 348 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
10575707 10575707 PRJNA283169_P_NODE_269_length_801_cov_4.973404_g217_i0 PRJNA283169 269 801 4.973404 39.83696604 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 898 0   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g217 i0 88.073 279.205992509363 763 84 95 6 2 762 4718743 4717986 Luteolibacter sp. SL250 chromosome blastn 223644 898 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
13125622 13125622 PRJNA283169_P_NODE_5491_length_182_cov_1.563910_g5428_i0 PRJNA283169 5491 182 1.56391 2.8463162 Luteolibacter sp. AS25 3135776 Bacteria Bacteria 335 1.3699999999999997e-87   NTclustered gi|2889346039|gb|CP151837.1| 3135776 g5428 i0 100 274.56043956044 181 0 99 0 1 181 456786 456606 Luteolibacter sp. AS25 chromosome, complete genome blastn 49970 335 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. AS25
14400807 14400807 PRJNA283169_P_NODE_7052_length_166_cov_0.880342_g6989_i0 PRJNA283169 7052 166 0.880342 1.46136772 Luteolibacter sp. LG18 2819286 Bacteria Bacteria 219 1.3e-52   NTclustered gi|2585939279|dbj|AP024600.1| 2819286 g6989 i0 90.419 47.3493975903614 167 14 100 2 1 166 2216675 2216840 Luteolibacter sp. LG18 DNA, complete genome blastn 7860 219 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. LG18
16361484 16361484 PRJNA283169_P_NODE_5773_length_178_cov_1.310078_g5710_i0 PRJNA283169 5773 178 1.310078 2.33193884 root 1 Root_unresolved Root_unresolved 329 6.21e-86   NTclustered gi|1774728408|gb|MN684281.1| 2736 g5710 i0 100 99.9550561797753 178 0 100 0 1 178 716 539 Verrucomicrobium spinosum strain MT_SG_E_24_27F.27F 16S ribosomal RNA gene, partial sequence blastn 17792 329 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium spinosum
18910419 18910419 PRJNA283169_P_NODE_2495_length_261_cov_2.066038_g2433_i0 PRJNA283169 2495 261 2.066038 5.39235918 Verrucomicrobiales 48461 Bacteria Bacteria 200 8.029999999999999e-47   NTclustered gi|2240218473|gb|CP097283.1| 239935 g2433 i0 82.609 264.275862068966 230 37 88 3 33 261 339980 339753 Akkermansia muciniphila strain NB2A-8-WC chromosome blastn 68976 200 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;